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If Graphviz has "lost edges", log a warning explaining the situation

documentation

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

layoutgraph drawing / layoutgraph drawing / layout

lowpriorityfeature

refactoring

Status: Open.

#400 In marbl/MetagenomeScope;

· fedarko opened on Mar 11, 2026

Move bad-edge rescuing on selected nodes / edges to be set on cy init

refactoring

Status: Open.

#399 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

rankdirs seem too large in recursive layout

bug

layoutgraph drawing / layoutgraph drawing / layout

Status: Open.

#398 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

Dagre and fCOSE only work sometimes?

bug

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

layoutgraph drawing / layoutgraph drawing / layout

Status: Open.

#397 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

Format control points distances and weights (to be passed to Cytoscape.js) better

codeissueNot quite bugs, but still issues with the code (e.g. style)Not quite bugs, but still issues with the code (e.g. style)

refactoring

Status: Open.

#396 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

Add "pause" button for toast messages

lowpriorityfeature

Status: Open.

#395 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

When a single edge is selected, add a little UI element for moving to its source or target node

lowpriorityfeature

Status: Open.

#393 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

Weird blurring on canvas when selecting groups of nodes

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

styleCSS / graph stylingCSS / graph styling

testing

Status: Open.

#391 In marbl/MetagenomeScope;

· fedarko opened on Mar 5, 2026

Use blob-promise for exporting screenshots

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

performance

Status: Open.

#390 In marbl/MetagenomeScope;

· fedarko opened on Mar 3, 2026

Very tiny treemap sectors are hard to see

bug

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

info-dialogRelated to the info dialog / summary plots (e.g. treemaps)Related to the info dialog / summary plots (e.g. treemaps)

Status: Open.

#387 In marbl/MetagenomeScope;

· fedarko opened on Feb 20, 2026

Split up _add_pattern() code

codeissueNot quite bugs, but still issues with the code (e.g. style)Not quite bugs, but still issues with the code (e.g. style)

decompositionRelated to the pattern decomposition procedureRelated to the pattern decomposition procedure

testing

Status: Open.

#386 In marbl/MetagenomeScope;

· fedarko opened on Feb 19, 2026

Adjust back edges in cyclic chains to avoid routing through sub-clusters

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

layoutgraph drawing / layoutgraph drawing / layout

lowpriorityfeature

question

styleCSS / graph stylingCSS / graph styling

Status: Open.

#385 In marbl/MetagenomeScope;

· fedarko opened on Feb 19, 2026