digraph "" {
-327622073 -> -93112614 [ color=black, label="-327622073.00 A 197(2)"];
-888635272 -> -395717245 [ color=black, label="-888635272.00 C 3448(1)"];
-324749538 -> 894040819 [ color=black, label="-324749538.00 G 13394(1)"];
219051783 -> 589199175 [ color=black, label="219051783.00 A 1411(2)"];
-304512243 -> 49491002 [ color=black, label="-304512243.01 T 3611(1)"];
474307375 -> 49491002 [ color=black, label="474307375.01 T 1371156(1)"];
289612258 [fillcolor=white, style=filled];
944378205 -> 686645112 [ color=black, label="944378205.00 G 811(2)"];
619135386 -> -125771362 [ color=black, label="619135386.00 T 10380(2)"];
-93112614 -> -327622073 [ color=black, label="-93112614.01 G 4125(1)"];
474307375 [fillcolor=white, style=filled];
-125771362 -> 619135386 [ color=black, label="-125771362.01 T 14127(1)"];
-125771362 [fillcolor=white, style=filled];
387345378 [fillcolor=white, style=filled];
274017611 -> -597362818 [ color=black, label="274017611.00 G 1136(3)"];
-304512243 [fillcolor=white, style=filled];
-888635272 -> 274017611 [ color=black, label="-888635272.01 T 39408(1)"];
-93112614 -> 983143691 [ color=black, label="-93112614.00 A 42592(1)"];
161134973 -> 944378205 [ color=black, label="161134973.01 G 5002(1)"];
49491002 [fillcolor=white, style=filled];
-125771362 -> 219051783 [ color=black, label="-125771362.00 G 9814(1)"];
894040819 -> -324749538 [ color=black, label="894040819.00 C 4246(2)"];
262588926 -> 289612258 [ color=black, label="262588926.00 C 1075(2)"];
-395717245 -> -888635272 [ color=black, label="-395717245.00 G 874(2)"];
-93112614 [fillcolor=white, style=filled];
49491002 -> -304512243 [ color=black, label="49491002.00 T 6020(2)"];
686645112 [fillcolor=white, style=filled];
-888635272 [fillcolor=white, style=filled];
983143691 [fillcolor=white, style=filled];
-597362818 [fillcolor=white, style=filled];
161134973 -> 944378205 [ color=black, label="161134973.00 A 9325(1)"];
289612258 -> -395717245 [ color=black, label="289612258.00 G 9133(1)"];
-304512243 -> 619135386 [ color=black, label="-304512243.00 C 32258(1)"];
983143691 -> 161134973 [ color=black, label="983143691.00 C 1178(2)"];
289612258 -> 262588926 [ color=black, label="289612258.01 A 9108(1)"];
262588926 [fillcolor=white, style=filled];
-395717245 [fillcolor=white, style=filled];
274017611 [fillcolor=white, style=filled];
589199175 [fillcolor=white, style=filled];
686645112 -> 262588926 [ color=black, label="686645112.01 T 22181(1)"];
894040819 [fillcolor=white, style=filled];
686645112 -> 983143691 [ color=black, label="686645112.00 C 5977(1)"];
219051783 [fillcolor=white, style=filled];
589199175 -> 219051783 [ color=black, label="589199175.00 T 5705(1)"];
387345378 -> 474307375 [ color=black, label="387345378.00 A 1415(2)"];
-327622073 [fillcolor=white, style=filled];
-324749538 -> 387345378 [ color=black, label="-324749538.01 T 181318(1)"];
161134973 [fillcolor=white, style=filled];
944378205 [fillcolor=white, style=filled];
474307375 -> 387345378 [ color=black, label="474307375.00 A 9939(1)"];
-597362818 -> 894040819 [ color=black, label="-597362818.00 A 21854(1)"];
619135386 [fillcolor=white, style=filled];
-597362818 -> 274017611 [ color=black, label="-597362818.01 C 3303(2)"];
-324749538 [fillcolor=white, style=filled];
}
Current chr15 subgraph --
Same graph, with lines shuffled around randomly, visualized with identical settings --
shuff.gvNote the back-edge in the cyclic chain with a bubble (second from the left). I assume the ordering of nodes matters here?
In particular, zooming in to the problematic edge:
It looks like 983143691 is defined before the 686... -> 983... back edge in both files, but in the current one the 983... -> 161... edge occurs after the back edge. Hmmm. (Update, moved the 983 -> 161 edge to the top of the file and the edge was still routed through the bubble.) Or maybe this is just Graphviz doing things according to its own whims