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techdev-project.yml
43 workflow runs
43 workflow runs

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chore: 🤖 sync copilot instructions - 2026-03-13 TechDev-project #53: Pull request #115 opened by ccbr-bot bot
7s update-copilot-instructions
update-copilot-instructions
7s
[pre-commit.ci] pre-commit autoupdate TechDev-project #52: Pull request #114 opened by pre-commit-ci bot
12s pre-commit-ci-update-config
pre-commit-ci-update-config
12s
Memory overallocation in process_somaticcaller_high TechDev-project #51: Issue #113 opened by qiyubio
9s
9s
fix: gs10 data partition; container syntax; input file name collision in Octopus; AnnotSV missing db; name tag TechDev-project #50: Pull request #111 opened by samarth8392
13s iss-110-redo
iss-110-redo
13s
/gs10 no longer avaiable on Biowulf ... container binding affected! TechDev-project #49: Issue #110 opened by kopardev
14s
14s
set slurm walltime to 4 days TechDev-project #48: Pull request #108 opened by kelly-sovacool
10s slurm-walltime
slurm-walltime
10s
Fix: Failed run due to old bindpaths; increased pipeline walltime TechDev-project #47: Pull request #107 opened by samarth8392
10s iss-106
iss-106
10s
LOGAN stub/dryrun failed TechDev-project #46: Issue #106 opened by HYan-lei
9s
9s
do not use global variables in modules TechDev-project #45: Issue #104 opened by kelly-sovacool
7s
7s
octopus variant caller does not use available cores & memory TechDev-project #44: Issue #103 opened by kelly-sovacool
7s
7s
ci: update workflows from CCBR/actions TechDev-project #43: Pull request #102 opened by kelly-sovacool
7s iss-101
iss-101
7s
fix docs workflow TechDev-project #42: Issue #101 opened by kelly-sovacool
7s
7s
Bug: input file name collision TechDev-project #41: Issue #100 opened by samarth8392
6s
6s
Use Nextflow v25 TechDev-project #40: Pull request #99 opened by samarth8392
9s iss-70
iss-70
9s
fix: improve CLI help & set mode=slurm as default TechDev-project #39: Pull request #97 opened by kelly-sovacool
16s cli-mode
cli-mode
16s
feat: update spooker & jobby for ccbr_tools v0.4.1 TechDev-project #38: Pull request #95 opened by kelly-sovacool
17s tools-0.4
tools-0.4
17s
ensure reference genomes match renee TechDev-project #37: Issue #94 opened by kelly-sovacool
16s
16s
use nf-schema for parameter validation TechDev-project #36: Issue #93 opened by kelly-sovacool
11s
11s
refactor(cli): use CCBR/Tools@v0.2.3 & update spooker usage TechDev-project #35: Pull request #92 opened by kelly-sovacool
12s cli-update
cli-update
12s
Qualimap and Deepvariant bug fixes TechDev-project #34: Pull request #91 opened by dnousome
10s fix_qualimap
fix_qualimap
10s
deepvariant sample name TechDev-project #33: Issue #90 opened by dnousome
12s
12s
Prepare release for ccbrpipeliner 8 TechDev-project #32: Issue #89 opened by kelly-sovacool
11s
11s
Show logan run usage in docs instead of nextflow run TechDev-project #31: Issue #88 opened by kelly-sovacool
14s
14s
docs: add Zenodo DOI to citation & readme TechDev-project #30: Pull request #87 opened by kelly-sovacool
13s zenodo
zenodo
13s
chore: cleanup dev changelog & version TechDev-project #29: Pull request #86 opened by kelly-sovacool
14s dev-cleanup
dev-cleanup
14s