Fix: Failed run due to old bindpaths; increased pipeline walltime

[samarth8392]

Changes

• Removed old bindpaths and fixed /gs10 doesn't exist error
• Increased pipeline walltime for slurm submission to 100 hours
• Minor documentation updates for setup and running LOGAN

Issues

Fixes #106
Fixes #88

PR Checklist

(Strikethrough any points that are not applicable.)

• This comment contains a description of changes with justifications, with any relevant issues linked.
• [ ] Write unit tests for any new features, bug fixes, or other code changes. testing framework not yet implemented
• [ ] Update docs if there are any API changes.
• [ ] If a new nextflow process is implemented, define the process container and stub.
• Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/