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Pull requests: nf-core/modules

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Pull requests list

Bump delly call
#11080 opened Mar 27, 2026 by bagnacan Loading…
4 tasks done
feat: civicpy/annotate module
#11079 opened Mar 27, 2026 by emmcauley Loading…
5 of 17 tasks
1
1
Fix deseq2 to accept spaces in variable names size/m
#11078 opened Mar 27, 2026 by delfiterradas Loading…
17 tasks
1
@delfiterradas
Fix dream to accept spaces in variable names size/s
#11077 opened Mar 27, 2026 by delfiterradas Loading…
17 tasks
1
@delfiterradas
Update GNU sort to comply to nf-core guidelines
#11072 opened Mar 27, 2026 by mahesh-panchal • Draft
17 tasks
1
add batch testing
#11071 opened Mar 27, 2026 by mashehu Loading…
Update merqury build number (addresses a bug)
#11070 opened Mar 27, 2026 by CormacKinsella Loading…
1 task done
Fix limma to accept spaces in variable names size/m
#11069 opened Mar 27, 2026 by delfiterradas Loading…
11 of 17 tasks
1
@delfiterradas
Update cellranger multi module to comply to nf-core guidelines
#11066 opened Mar 27, 2026 by mahesh-panchal • Draft
2 of 17 tasks
Minia update Ready for Review
#11065 opened Mar 27, 2026 by LiaOb21 Loading…
7 of 17 tasks
1
13
tabix/tabix: update module to support region-based VCF extraction
#11064 opened Mar 27, 2026 by luisas Loading…
12 of 17 tasks
6
Foldmason topics migration & bumpversion update module
#11063 opened Mar 27, 2026 by EfraMP Loading…
7 of 17 tasks
2
use formula directly without intercept in deseq2
#11062 opened Mar 26, 2026 by atrigila Loading…
@atrigila
Bioawk update to move closer to Gawk size/m size/s
#11060 opened Mar 26, 2026 by DLBPointon Loading…
12
Add snpclustering subworkflow
#11059 opened Mar 26, 2026 by dbaku42 Loading…
3 tasks done
Anarcii
#11058 opened Mar 26, 2026 by Clara0611 • Draft
11 of 14 tasks
1
split outputs size/s
#11054 opened Mar 26, 2026 by suzannejin • Draft
17 tasks
5
New modules: Llamacpp-python/run and huggingface/download for allowing to run simple text workloads with local LLMs new module Adding a new module Ready for Review
#11053 opened Mar 26, 2026 by toniher Loading…
13 of 17 tasks
Bump CuteSV version
#11052 opened Mar 26, 2026 by awgymer Loading…
17 tasks
1
Masurca container-issue help wanted Extra attention is needed
#11049 opened Mar 25, 2026 by LiaOb21 • Draft
17 tasks
1
9
Update module ctree Ready for Review
#11043 opened Mar 25, 2026 by valerianilucrezia Loading…
5 tasks done
1
Update pairtools to 1.1.3 and migrating to topic version
#11039 opened Mar 25, 2026 by birkiy Loading…
9
Big slice imp modules
#11034 opened Mar 24, 2026 by SkyLexS Loading…
9 of 14 tasks
2
Update to topics chromap/chromap
#11025 opened Mar 23, 2026 by LouisLeNezet Loading…
17 tasks
1
@LouisLeNezet
2
New module: exomiser/analyse size/m
#11023 opened Mar 23, 2026 by matthdsm • Draft
17 tasks
@matthdsm
16
ProTip! Adding no:label will show everything without a label.