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Pull requests: nf-core/modules

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Pull requests list

Add gcta/makegrm module
#11650 opened May 15, 2026 by lyh970817 Contributor Loading…
14 tasks done
New module: SAVANA/RUN Ready for Review
#11649 opened May 15, 2026 by manascripts Member Loading…
11 of 13 tasks
Update parabricks mutectcaller for sarek
#11647 opened May 14, 2026 by gburnett-nvidia Contributor Loading…
Allow cellranger renaming to ignore irregular filename patterns enhancement New feature or request
#11646 opened May 14, 2026 by tgelafr-pfzr Contributor • Draft
5 of 7 tasks
1
@tgelafr-pfzr
9
Amulety modules bump versions
#11645 opened May 14, 2026 by ggabernet Member Loading…
17 tasks
3
Add mifaser Ready for Review
#11643 opened May 14, 2026 by vinisalazar Contributor Loading…
6
Add custom clustering
#11642 opened May 13, 2026 by dbaku42 Loading…
3 tasks done
Update to topics hmmer/*
#11637 opened May 12, 2026 by LouisLeNezet Contributor Loading…
17 tasks
6
@LouisLeNezet
7
Update to topics hamronization/*
#11630 opened May 12, 2026 by LouisLeNezet Contributor Loading…
17 tasks
6
@LouisLeNezet
new module DeepMAsED
#11629 opened May 12, 2026 by SkyLexS Contributor Loading…
13 of 17 tasks
@SkyLexS
New module: octopusv/merge Ready for Review
#11617 opened May 12, 2026 by manascripts Member Loading…
9 of 14 tasks
1
Update to topics gt/*
#11616 opened May 12, 2026 by LouisLeNezet Contributor Loading…
17 tasks
5
@LouisLeNezet
Add primerprospector_analyzeprimers size/m
#11615 opened May 12, 2026 by vagkaratzas Contributor Loading…
14 of 17 tasks
2
Fix krakenuniq build input deletion and tests
#11607 opened May 12, 2026 by mahesh-panchal Member Loading…
2 of 17 tasks
1
9
Update to topics gstama/*
#11603 opened May 11, 2026 by LouisLeNezet Contributor Loading…
17 tasks
3
@LouisLeNezet
Update to topics graphtyper/*
#11599 opened May 11, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
Update to topics graphmap2/*
#11596 opened May 11, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
Simplify dream contrast handling
#11584 opened May 11, 2026 by grst Member Loading…
17 tasks
6
fix: sentieon gvcftyper accepts intervals
#11582 opened May 11, 2026 by nicorap Loading…
12 of 14 tasks
3
Add HTSLIB/BGZIPTABIX and deprecate redundant modules new module Adding a new module size/xl
#11571 opened May 8, 2026 by itrujnara Contributor Loading…
24 of 26 tasks
21
Support matrix.mtx.gz cellbender remove-background input
#11565 opened May 7, 2026 by alecw Loading…
4 of 13 tasks
3
Add Binette
#11563 opened May 7, 2026 by prototaxites Contributor Loading…
12 of 17 tasks
8
Update to topics getorganelle/*
#11561 opened May 7, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
5
PROOF OF CONCEPT: samtools/multicommand
#11550 opened May 7, 2026 by prototaxites Contributor • Draft
17 tasks
10
Add the finaletoolkit/delfi module
#11547 opened May 7, 2026 by lbeltrame Contributor Loading…
11 of 17 tasks
@lbeltrame
25
ProTip! Exclude everything labeled bug with -label:bug.