Skip to content

Pull requests: nf-core/modules

New pull request New
204 Open 7,905 Closed
204 Open 7,905 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Bump delly call
#11080 opened Mar 27, 2026 by bagnacan Loading…
4 tasks done
1
feat: civicpy/annotate module
#11079 opened Mar 27, 2026 by emmcauley Loading…
5 of 17 tasks
1
1
Fix deseq2 to accept spaces in variable names size/m
#11078 opened Mar 27, 2026 by delfiterradas Loading…
17 tasks
1
@delfiterradas
Fix dream to accept spaces in variable names size/s
#11077 opened Mar 27, 2026 by delfiterradas Loading…
17 tasks
1
@delfiterradas
Update GNU sort to comply to nf-core guidelines
#11072 opened Mar 27, 2026 by mahesh-panchal • Draft
17 tasks
1
add batch testing
#11071 opened Mar 27, 2026 by mashehu Loading…
Update merqury build number (addresses a bug)
#11070 opened Mar 27, 2026 by CormacKinsella Loading…
1 task done
Fix limma to accept spaces in variable names size/m
#11069 opened Mar 27, 2026 by delfiterradas Loading…
11 of 17 tasks
1
@delfiterradas
Update cellranger multi module to comply to nf-core guidelines
#11066 opened Mar 27, 2026 by mahesh-panchal • Draft
2 of 17 tasks
Minia update Ready for Review
#11065 opened Mar 27, 2026 by LiaOb21 Loading…
7 of 17 tasks
1
13
tabix/tabix: update module to support region-based VCF extraction
#11064 opened Mar 27, 2026 by luisas Loading…
12 of 17 tasks
6
Foldmason topics migration & bumpversion update module
#11063 opened Mar 27, 2026 by EfraMP Loading…
7 of 17 tasks
2
use formula directly without intercept in deseq2
#11062 opened Mar 26, 2026 by atrigila Loading…
@atrigila
Bioawk update to move closer to Gawk size/m size/s
#11060 opened Mar 26, 2026 by DLBPointon Loading…
12
Add snpclustering subworkflow
#11059 opened Mar 26, 2026 by dbaku42 Loading…
3 tasks done
Anarcii
#11058 opened Mar 26, 2026 by Clara0611 • Draft
11 of 14 tasks
1
split outputs size/s
#11054 opened Mar 26, 2026 by suzannejin • Draft
17 tasks
5
New modules: Llamacpp-python/run and huggingface/download for allowing to run simple text workloads with local LLMs new module Adding a new module Ready for Review
#11053 opened Mar 26, 2026 by toniher Loading…
13 of 17 tasks
Bump CuteSV version
#11052 opened Mar 26, 2026 by awgymer Loading…
17 tasks
1
Masurca container-issue help wanted Extra attention is needed
#11049 opened Mar 25, 2026 by LiaOb21 • Draft
17 tasks
1
9
Update module ctree Ready for Review
#11043 opened Mar 25, 2026 by valerianilucrezia Loading…
5 tasks done
1
Update pairtools to 1.1.3 and migrating to topic version
#11039 opened Mar 25, 2026 by birkiy Loading…
9
Big slice imp modules
#11034 opened Mar 24, 2026 by SkyLexS Loading…
9 of 14 tasks
2
Update to topics chromap/chromap
#11025 opened Mar 23, 2026 by LouisLeNezet Loading…
17 tasks
1
@LouisLeNezet
2
New module: exomiser/analyse size/m
#11023 opened Mar 23, 2026 by matthdsm • Draft
17 tasks
@matthdsm
16
ProTip! no:milestone will show everything without a milestone.