Search results

FLAIR diffexp crashes when samples are not in continuous ordered groups

Status: Open.

#646 In BrooksLabUCSC/flair;

· cafelton opened on Apr 3, 2026

default to discarding mono-exon transcripts that are not in annotation

Status: Open.

#642 In BrooksLabUCSC/flair;

· diekhans opened on Mar 24, 2026

flair_transcriptome thread usage exceeds expected allocation on HPC systems

Status: Open.

#640 In BrooksLabUCSC/flair;

· maxgmarin opened on Mar 19, 2026

issues with FLAIR align using splice junctions

Status: Open.

#633 In BrooksLabUCSC/flair;

· diekhans opened on Feb 27, 2026

FLAIR franscriptome should clearly document either a GTF or junctions file must be provide

Status: Open.

#632 In BrooksLabUCSC/flair;

· diekhans opened on Feb 18, 2026

How to run diff_iso_usage with multiple samples per condition?

Status: Open.

#626 In BrooksLabUCSC/flair;

· evans-ZH opened on Jan 13, 2026

flair transcriptome: crashing with just one (of 20) alignments

Status: Open.

#623 In BrooksLabUCSC/flair;

· sklages opened on Dec 31, 2025

Flair correct crashing on one specific read conversion on hsa chr7; v3.0.0.b1

Status: Open.

#620 In BrooksLabUCSC/flair;

· semmrich opened on Dec 16, 2025

DiffSplice

Status: Open.

#615 In BrooksLabUCSC/flair;

· Juliaycliu opened on Nov 25, 2025

add option to create PDFs or SVGs to plot_isoform_usage

Status: Open.

#609 In BrooksLabUCSC/flair;

· diekhans opened on Nov 8, 2025

flair quantify

Status: Open.

#608 In BrooksLabUCSC/flair;

· ucsfpan opened on Nov 3, 2025

FLAIR stranding can be improved

Status: Open.

#600 In BrooksLabUCSC/flair;

· cafelton opened on Oct 21, 2025