FLAIR diffexp crashes when samples are not in continuous ordered groups

[cafelton]

One thing that has been frustrating for a time is that diffexp only allows input of 2 groups, but I recently found that even if you input only 2 condition groups, if they are in an order such as A B A B A B, it crashes. It only runs with conditions ordered as A A A B B B.
For the future, we should allow input of tables with any number of groups and have the user specify which group is A and which group is B. We should also improve the file parsing so that groups can be in any order.

[diekhans]

I want to convert all of these type of data files to real TSVs. cafelton ***@***.***> writes:

…

cafelton created an issue (BrooksLabUCSC/flair#646) One thing that has been frustrating for a time is that diffexp only allows input of 2 groups, but I recently found that even if you input only 2 condition groups, if they are in an order such as A B A B A B, it crashes. It only runs with conditions ordered as A A A B B B. For the future, we should allow input of tables with any number of groups and have the user specify which group is A and which group is B. We should also improve the file parsing so that groups can be in any order. -- Reply to this email directly or view it on GitHub: #646 You are receiving this because you are subscribed to this thread. Message ID: ***@***.***>