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orthogroups

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K-nie / genome-format-converters

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A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

python cli benchmark bioinformatics genomics gff3 plink vcf genbank gtf bed phylogenomics hmmer eigenstrat orthogroups format-conversion
  • Updated May 5, 2026
  • Python

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