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vcf2db does not create genotypes table

Status: Open.

#71 In quinlan-lab/vcf2db;

· ramashka328 opened on Jan 26, 2023

Issue querying db's made with latest cyvcf2

Status: Open.

#69 In quinlan-lab/vcf2db;

· matthdsm opened on Mar 17, 2022

can't get a working pair of vcf2db - gemini

Status: Open.

#68 In quinlan-lab/vcf2db;

· naumenko-sa opened on Feb 23, 2022

Cannot parse VEP Mastermind CSQ tags which contains URL

Status: Open.

#67 In quinlan-lab/vcf2db;

· nswh opened on Mar 9, 2021

Import Funcotator annotated output into GeMINI using vcf2db

Status: Open.

#66 In quinlan-lab/vcf2db;

· sprakashUTH opened on Jul 20, 2020

Differences in impact severity between gemini and vcf2db on vep 'MODIFIER' impact variants

Status: Open.

#62 In quinlan-lab/vcf2db;

· nvteja opened on Oct 1, 2019

Parse error (with example) on somatic flag

Status: Open.

#61 In quinlan-lab/vcf2db;

· lbeltrame opened on Aug 27, 2019

vcf2db can't handle records that were skipped by vcfanno

Status: Open.

#59 In quinlan-lab/vcf2db;

· lbeltrame opened on May 21, 2019

Allow skipping bad records instead of raising exceptions

Status: Open.

#58 In quinlan-lab/vcf2db;

· lbeltrame opened on May 14, 2019

issue with creating database

Status: Open.

#57 In quinlan-lab/vcf2db;

· atimms opened on May 2, 2019

Constraints violation when loading a merged VCF

Status: Open.

#55 In quinlan-lab/vcf2db;

· lbeltrame opened on Feb 13, 2019

Why dash symbol is not allowed in sample names?

Status: Open.

#52 In quinlan-lab/vcf2db;

· naumenko-sa opened on Oct 6, 2018