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    14 repositories

    • mito_linescan

      Public
      A python code to locate mitochondria and perform a line scan along their longer axis to get the intensity of targets along the mitochondrial axis.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Apr 21, 2026Apr 21, 2026

    • patch_analysis

      Public
      Python codes related to the patch analysis
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • co-translating_ribosome_scripts

      Public
      Python codes related to the analysis of co-translating ribosomes on outer mitochondrial membrane
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 13, 2026Apr 13, 2026

    • GrotjahnLab.github.io

      Public
      Grotjahn Lab Website
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•0•0•Updated Mar 19, 2026Mar 19, 2026

    • surface_morphometrics

      Public
      Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
      Python
      •
      GNU General Public License v3.0
      •13•33•7•0•Updated Mar 16, 2026Mar 16, 2026

    • tomo-db

      Public
      EJS
      •0•1•0•0•Updated Sep 26, 2024Sep 26, 2024

    • warp_lamella_adapters

      Public
      A short optimized pipeline to get lamella tomography (with pretilt and with some tilts obscured or mistracked) to work well with Warp
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•1•Updated Dec 20, 2022Dec 20, 2022

    • filament_morphometrics

      Public
      Morphometrics, Particle Picking, and Guided STA on Cytoskeletal Filaments from CryoET
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 12, 2022Oct 12, 2022

    • pycurv

      Public
      Reliable estimation of membrane curvature for cryo-electron tomography
      Python
      •
      GNU Lesser General Public License v3.0
      •9•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • measure_models

      Public
      Making measurements between subcellular models from cryoET
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated Nov 16, 2021Nov 16, 2021

    • teamtomo.github.io

      Public
      A collaborative knowledge sharing platform for the cryo-ET community
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •12•0•0•0•Updated Apr 11, 2021Apr 11, 2021

    • guided_tomo_align

      Public
      Scripts for using references aligned to particles in 3D subvolumes in Chimera sessions for alignment
      Python
      •0•6•0•0•Updated Oct 12, 2020Oct 12, 2020

    • autolamella

      Public
      Python
      •
      MIT License
      •16•0•0•0•Updated Feb 5, 2020Feb 5, 2020

    • polyqIB

      Public
      Software developed to analyze how polyQ inclusion bodies interact with ER membranes in situ
      Python
      •3•0•0•0•Updated Nov 2, 2019Nov 2, 2019
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