Python codes related to the analysis of co-translating ribosomes on outer mitochondrial membrane for this publication:
Cytoplasmic ribosomes on mitochondria alter the local membrane environment for protein import. Ya-Ting Chang, Benjamin A. Barad, Juliette Hamid, Hamidreza Rahmani, Brian M. Zid, Danielle A. Grotjahn J Cell Biol. (2025) 224 (4): e202407110; doi:https://doi.org/10.1083/jcb.202407110
The development of the scripts was based on the Surface Morphometrics toolkit. Installing Surface Morphometrics is highly recommended.
Pycurv and Surface Morphometrics toolkits were applied to this project.
Surface morphometrics: https://github.com/GrotjahnLab/surface_morphometrics
Quantifying organellar ultrastructure in cryo-electron tomography using a surface morphometrics pipeline.
Benjamin A. Barad†, Michaela Medina†, Daniel Fuentes, R. Luke Wiseman, Danielle A. Grotjahn
J Cell Biol. 2023 Apr 3;222(4):e202204093; doi: https://doi.org/10.1083/jcb.202204093
Reliable estimation of membrane curvature for cryo-electron tomography.
Maria Salfer,Javier F. Collado,Wolfgang Baumeister,Rubén Fernández-Busnadiego,Antonio Martínez-Sánchez
PLOS Comp Biol August 2020; doi: https://doi.org/10.1371/journal.pcbi.1007962