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Add rtgtools/cnveval

enhancementNew feature or requestNew feature or request

Status: Open.

#266 In nf-core/variantbenchmarking;

· georgiakes opened on Jan 22, 2026

Port local subworkflows to nf-core/modules

enhancementNew feature or requestNew feature or request

Status: Open.

#265 In nf-core/variantbenchmarking;

· georgiakes opened on Jan 22, 2026

Port local modules to nf-core/modules

enhancementNew feature or requestNew feature or request

Status: Open.

#264 In nf-core/variantbenchmarking;

· georgiakes opened on Jan 22, 2026

corcordance fails with regions file

bugSomething isn't workingSomething isn't working

Status: Open.

#260 In nf-core/variantbenchmarking;

· kubranarci opened on Dec 9, 2025

Add unit tests and documentation to local modules and subworkflows

enhancementNew feature or requestNew feature or request

Status: Open.

#257 In nf-core/variantbenchmarking;

· kubranarci opened on Dec 1, 2025

check if BED follows standard format of 0 indexing

enhancementNew feature or requestNew feature or request

Status: Open.

#256 In nf-core/variantbenchmarking;

· kubranarci opened on Dec 1, 2025

add TP_comp for sompy

enhancementNew feature or requestNew feature or request

Status: Open.

#233 In nf-core/variantbenchmarking;

· kubranarci opened on Oct 14, 2025

concordance analysis for somatic benchmarking

enhancementNew feature or requestNew feature or request

Status: Open.

#232 In nf-core/variantbenchmarking;

· kubranarci opened on Oct 14, 2025

unexpected F1 score running somatic snv/indel variants benchmarking

bugSomething isn't workingSomething isn't working

Status: Open.

#225 In nf-core/variantbenchmarking;

· gianfilippo opened on Sep 29, 2025

Multiple truth sets within the same run

enhancementNew feature or requestNew feature or request

Status: Open.

#202 In nf-core/variantbenchmarking;

· fellen31 opened on Jun 5, 2025

add vcfdist tool for benchmarking

enhancementNew feature or requestNew feature or request

Status: Open.

#199 In nf-core/variantbenchmarking;

· kubranarci opened on Jun 3, 2025

regions.csv file is not being merged

bugSomething isn't workingSomething isn't working

Status: Open.

#187 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 17, 2025