Description of feature
in bin/subtract_variants.py
It will be good to check if BED follows standard format of 0 indexing. Meaning if the bed indixeing does not start with 0 then this might be wrong here @heylf .
if idx < len(chrom_regions):
start, end = chrom_regions[idx]
if pos >= start + 1 and pos <= end:
Description of feature
in bin/subtract_variants.py
It will be good to check if BED follows standard format of 0 indexing. Meaning if the bed indixeing does not start with 0 then this might be wrong here @heylf .