feat: civicpy/annotate module

[emmcauley]

PR checklist

Closes #11076.

This module adds CIVICpy, an analysis toolkit and SDK for extracting and analyzing knowledge from the CIViC knowledgebase. Tests are added.

⚠️ There seems to be something wrong with the pip and conda civicpy packages, they are both lacking backports:

Traceback (most recent call last):
  File "/usr/local/bin/civicpy", line 6, in <module>
    from civicpy.cli import cli
  File "/usr/local/lib/python3.12/site-packages/civicpy/cli.py", line 4, in <module>
    from civicpy import LOCAL_CACHE_PATH, civic
  File "/usr/local/lib/python3.12/site-packages/civicpy/civic.py", line 13, in <module>
    from backports.datetime_fromisoformat import MonkeyPatch
ModuleNotFoundError: No module named 'backports.datetime_fromisoformat'

Trying to add backports into the wave container build fails even if they're both from pip.

Also logged an issue on the civicpy repo here.

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the module conventions in the contribution docs
• If necessary, include test data in your PR.
• Remove all TODO statements.
• Broadcast software version numbers to topic: versions - See version_topics
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • nf-core modules test <MODULE> --profile docker
    • nf-core modules test <MODULE> --profile singularity
    • nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • nf-core subworkflows test <SUBWORKFLOW> --profile conda

[emmcauley]

these are non-standard because I ran into issues building the wave container for docker + singularity