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Big slice imp modules#11034

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SkyLexS wants to merge 6 commits intonf-core:masterfrom
SkyLexS:big_slice_imp_modules
Open

Big slice imp modules#11034
SkyLexS wants to merge 6 commits intonf-core:masterfrom
SkyLexS:big_slice_imp_modules

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@SkyLexS
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@SkyLexS SkyLexS commented Mar 24, 2026

PR checklist

Closes #XXX

  • This update includes new arguments for the bigslice tool.
  • If you've fixed a bug or added code that should be tested, add tests!
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • [ x Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

Comment on lines -17 to -18
// WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
tuple val("${task.process}"), val('bigslice'), val("2.0.2"), topic: versions, emit: versions_bigslice
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Please keep this

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working on it rn sorry

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3 participants