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Welcome to the SAHA wiki!

These pages are meant to help you use SAHA on your own data. If you have comments/concerns/suggestions, we welcome you to open an issue or check our troubleshooting page.

For starters: Preparing Seurat object for SAHA

Quick SAHA workflow: Installation & Quickstart

In-depth SAHA workflow: SAHA Main Workflow

Extra functions: Auxiliary Functions

Troubleshooting: Improving SAHA Runs

Working with custom databases: SAHA with Custom Databases

Comparing Multiple SAHA runs: Multi-SAHA