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8 changes: 7 additions & 1 deletion malariagen_data/anoph/genome_features.py
Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
import warnings
from typing import Dict, Optional, Tuple, Mapping

import bokeh.models
Expand Down Expand Up @@ -53,7 +54,12 @@ def _geneset_gff3_path(self):
return self.config["GENESET_GFF3_PATH"]

def geneset(self, *args, **kwargs): # pragma: no cover
"""Deprecated, this method has been renamed to genome_features()."""
"""Deprecated, use genome_features() instead."""
warnings.warn(
"geneset() has been renamed to genome_features() - please update your code.",
DeprecationWarning,
stacklevel=2,
)
return self.genome_features(*args, **kwargs)

def _genome_features(self, *, attributes: Tuple[str, ...]):
Expand Down
7 changes: 6 additions & 1 deletion malariagen_data/anoph/snp_data.py
Original file line number Diff line number Diff line change
Expand Up @@ -1279,7 +1279,12 @@ def _snp_calls(
return ds

def snp_dataset(self, *args, **kwargs): # pragma: no cover
"""Deprecated, this method has been renamed to snp_calls()."""
"""Deprecated, use snp_calls() instead."""
warnings.warn(
"snp_dataset() has been renamed to snp_calls() - please update your code.",
DeprecationWarning,
stacklevel=2,
)
return self.snp_calls(*args, **kwargs)

def _prep_region_cache_param(
Expand Down
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