Some refactoring#586

Merged

marcelm merged 8 commits into

mainfrom

May 11, 2026

Commits on May 11, 2026

Replace shuffle_top_nams with a generic shuffle_best function

NicolasBuchin
authored and
marcelm
committed
Add more tests for has_shared_substring

Nicolas Buchin
authored and
marcelm
committed
Let is_proper_pair accept alignments directly (no Option)

Nicolas Buchin
authored and
marcelm
committed
Remove n_matches attribute from Nam struct

NicolasBuchin
authored and
marcelm
committed
Replace joint_mapq_from_high_scores with generic alignment_quality function

NicolasBuchin
authored and
marcelm
committed
Refactor: Let colinear_chaining return a ChainingResult
marcelm
committed
Refactor: Let ChainingResult take ownership of the anchors
marcelm
committed
Refactor: Add parameters field to ChainingResult
marcelm
committed