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Merge branch 'main' into develop

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Merged

Develop => main for 0.1.7 #136

Merge branch 'main' into develop
b235fb2
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Codecov / codecov/project succeeded Apr 21, 2026 in 1s

58.53% (+2.05%) compared to 98d7591

View this Pull Request on Codecov

58.53% (+2.05%) compared to 98d7591

Details

Codecov Report

❌ Patch coverage is 96.78715% with 8 lines in your changes missing coverage. Please review.
✅ Project coverage is 58.53%. Comparing base (98d7591) to head (b235fb2).

Files with missing lines Patch % Lines
src/cdm_data_loaders/pipelines/all_the_bacteria.py 95.78% 4 Missing ⚠️
src/cdm_data_loaders/pipelines/ncbi_rest_api.py 89.74% 4 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##             main     #136      +/-   ##
==========================================
+ Coverage   56.47%   58.53%   +2.05%     
==========================================
  Files          63       64       +1     
  Lines        3079     3229     +150     
==========================================
+ Hits         1739     1890     +151     
+ Misses       1340     1339       -1     
Files with missing lines Coverage Δ
src/cdm_data_loaders/pipelines/core.py 100.00% <100.00%> (+1.72%) ⬆️
src/cdm_data_loaders/pipelines/cts_defaults.py 100.00% <100.00%> (ø)
src/cdm_data_loaders/pipelines/uniprot_kb.py 95.23% <100.00%> (ø)
src/cdm_data_loaders/pipelines/uniref.py 96.77% <100.00%> (-0.11%) ⬇️
src/cdm_data_loaders/readers/dsv.py 95.65% <100.00%> (+0.30%) ⬆️
src/cdm_data_loaders/utils/download/core.py 100.00% <100.00%> (ø)
src/cdm_data_loaders/pipelines/all_the_bacteria.py 95.78% <95.78%> (ø)
src/cdm_data_loaders/pipelines/ncbi_rest_api.py 88.23% <89.74%> (+5.65%) ⬆️

... and 1 file with indirect coverage changes


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