Develop => main for 0.1.7

[ialarmedalien]

Description of PR purpose/changes

• Please include a summary of the change and which issue is fixed.
• Please also include relevant motivation and context.
• List any dependencies that are required for this change.

Testing Instructions

• Details for how to test the PR:

• Tests pass locally and in GitHub Actions

Dev Checklist:

• My code follows the guidelines at https://sites.google.com/lbl.gov/trussresources/home?authuser=0
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes
• I have run Ruff format to format my code
• I have run Ruff check and fixed any errors that it uncovered
• Any dependent changes have been merged and published in downstream modules

Updating Version and Release Notes (if applicable)

• Version has been bumped for each release.
• README has been updated for each release.

[codecov]

Codecov Report

❌ Patch coverage is 96.78715% with 8 lines in your changes missing coverage. Please review.
✅ Project coverage is 58.53%. Comparing base (98d7591) to head (b235fb2).
⚠️ Report is 10 commits behind head on main.

Files with missing lines	Patch %	Lines
src/cdm_data_loaders/pipelines/all_the_bacteria.py	95.78%	4 Missing ⚠️
src/cdm_data_loaders/pipelines/ncbi_rest_api.py	89.74%	4 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #136      +/-   ##
==========================================
+ Coverage   56.47%   58.53%   +2.05%     
==========================================
  Files          63       64       +1     
  Lines        3079     3229     +150     
==========================================
+ Hits         1739     1890     +151     
+ Misses       1340     1339       -1     

Files with missing lines	Coverage Δ
src/cdm_data_loaders/pipelines/core.py	100.00% <100.00%> (+1.72%)	⬆️
src/cdm_data_loaders/pipelines/cts_defaults.py	100.00% <100.00%> (ø)
src/cdm_data_loaders/pipelines/uniprot_kb.py	95.23% <100.00%> (ø)
src/cdm_data_loaders/pipelines/uniref.py	96.77% <100.00%> (-0.11%)	⬇️
src/cdm_data_loaders/readers/dsv.py	95.65% <100.00%> (+0.30%)	⬆️
src/cdm_data_loaders/utils/download/core.py	100.00% <100.00%> (ø)
src/cdm_data_loaders/pipelines/all_the_bacteria.py	95.78% <95.78%> (ø)
src/cdm_data_loaders/pipelines/ncbi_rest_api.py	88.23% <89.74%> (+5.65%)	⬆️

... and 1 file with indirect coverage changes

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