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Dummy sets_stats_df if sets is not None but is empty #1

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Dummy sets_stats_df if sets is not None but is empty #1

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3 changes: 3 additions & 0 deletions cytoprocess/commands/extract_cyto.py
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Original file line number Diff line number Diff line change
Expand Up @@ -198,6 +198,9 @@ def run(ctx: click.Context, project: Path, list_keys=False, force=False):
'acq_imaging_ratio': 0,
'acq_imaged_volume_uL': 0,
'acq_analysed_volume_uL': 0}, index=[0])
# Dummy sets_stats_df if sets is not None but is empty.
sets_stats_df = set_stats_df.copy()

if sets is None:
logger.warning(f"No set information found in '{json_file.name}'; CytoProcess will not be able to compute subsampling factors.")
else:
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