Fix bioconda recipe issues and update to 0.2.2

.github/workflows/release.yml

@@ -126,67 +126,3 @@ jobs:
           tags: |
             ghcr.io/${{ github.repository }}:${{ steps.version.outputs.version }}
             ghcr.io/${{ github.repository }}:latest
-
-  # ── 6. Bioconda PR (final releases only — no "rc" in tag) ────────────
-  bioconda-pr:
-    needs: publish-pypi
-    runs-on: ubuntu-latest
-    if: ${{ !contains(github.ref_name, 'rc') }}   # skip RC tags
-    steps:
-      - name: Get version from tag
-        run: echo "VERSION=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV
-
-      - name: Fetch SHA256 from PyPI
-        run: |
-          SHA256=$(curl -s https://pypi.org/pypi/afquery/${VERSION}/json \
-            | jq -r '.urls[] | select(.packagetype=="sdist") | .digests.sha256')
-          echo "SHA256=${SHA256}" >> $GITHUB_ENV
-
-      - name: Get fork owner
-        env:
-          GH_TOKEN: ${{ secrets.GH_PAT }}
-        run: echo "FORK_USER=$(gh api user --jq .login)" >> $GITHUB_ENV
-
-      - name: Sync fork with upstream
-        env:
-          GH_TOKEN: ${{ secrets.GH_PAT }}
-        run: gh repo sync ${FORK_USER}/bioconda-recipes --source bioconda/bioconda-recipes --branch master
-
-      - name: Checkout afquery repo
-        uses: actions/checkout@v4
-        with:
-          path: afquery-repo
-
-      - name: Checkout fork of bioconda-recipes
-        uses: actions/checkout@v4
-        with:
-          repository: ${{ env.FORK_USER }}/bioconda-recipes
-          token: ${{ secrets.GH_PAT }}
-          path: bioconda-recipes
-
-      - name: Update recipe
-        working-directory: bioconda-recipes
-        run: |
-          mkdir -p recipes/afquery
-          cp ../afquery-repo/recipes/afquery/meta.yaml recipes/afquery/meta.yaml
-          sed -i "s/^{% set version = .* %}/{% set version = \"${VERSION}\" %}/" recipes/afquery/meta.yaml
-          sed -i "s/sha256: .*/sha256: ${SHA256}/" recipes/afquery/meta.yaml
-          sed -i "s/^  number: .*/  number: 0/" recipes/afquery/meta.yaml
-
-      - name: Create pull request
-        working-directory: bioconda-recipes
-        env:
-          GH_TOKEN: ${{ secrets.GH_PAT }}
-        run: |
-          git config user.name "github-actions[bot]"
-          git config user.email "github-actions[bot]@users.noreply.github.com"
-          git checkout -b afquery-${VERSION}
-          git add recipes/afquery/meta.yaml
-          git commit -m "Update afquery to ${VERSION}"
-          git push origin afquery-${VERSION}
-          gh pr create \
-            --repo bioconda/bioconda-recipes \
-            --title "Update afquery to ${VERSION}" \
-            --body "Automated version bump from https://github.com/dlopez-bioinfo/afquery/releases/tag/v${VERSION}" \
-            --head "${FORK_USER}:afquery-${VERSION}" \
-            --base master

recipes/afquery/meta.yaml

@@ -1,13 +1,13 @@
 {% set name = "afquery" %}
-{% set version = "0.1.0" %}
+{% set version = "0.2.2" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: PLACEHOLDER
+  url: https://files.pythonhosted.org/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: 28ddc9afe5260ecdefab83679e0633684980666c49812215d1233ce3bae4fb7f
 
 build:
   noarch: python
@@ -16,14 +16,7 @@ build:
   entry_points:
     - afquery = afquery.cli:cli
   run_exports:
-    - python >=3.10
-    - pyroaring >=0.4.8
-    - pyarrow >=14.0
-    - duckdb >=0.10
-    - click >=8.1
-    - cyvcf2 >=0.30
-    - tqdm >=4.60
-    - pyranges >=0.1.2,<0.2
+    - {{ pin_subpackage("afquery", max_pin="x.x") }}
 
 requirements:
   host:
@@ -50,6 +43,7 @@ test:
 about:
   home: https://github.com/dlopez-bioinfo/afquery
   license: MIT
+  license_file: LICENSE
   summary: Genomic allele frequency query engine with bitmap-encoded genotypes
 
 extra: