nested Patlak and generalized Patlak OSMAPOSL (POSMAPOSL & GPOSMAPOSL) and nested Richardson-Lucy Motion Deconvolution Image Reconstruction (RLMCIR)#1685
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February 13, 2012 17:08
- many updates and clarifications, especially related to using CMake
… if all options were given (i.e. if you attempted to use the defaults, the program crashed). Also, confusingly it printed text with ACF_threshold once it was going, while the command line option is ACF-threshold.
…ite (otherwise it doesn't generate the documentation)
…of using a const member as size for an array (needed for VC2010)
…y uses functions from those
…ing about WIN32 on cygwin is still there. - add check on system getopt here (not only in buildblock) as stir/getopt.h need to know
…/getopt.h needs to know always
…re we called error()) - slightly better error message when reading the matrix failed
- add a few more classes
…sed to private typedef (as this confuses SWIG). This change makes sense anyway.
…pedef (as this confuses SWIG). This change makes sense anyway.
- adapt ITKImageInputFileFormat::read_from_file to check if it's a DICOM file, and if so, attempt to read the whole volume (differentiating on series/frame/gate)
…ectory info was not given
…aw_ECAT_projdata_to_interfile.cxx
The script checks scatter against a previous result. However, there's a random number generator is used to assign the exact location of the scatter points. With the current settings, the difference can be larger than the previous threshold, so I increased it to 4% of the max.
- ECAT7 projection data was read incorrectly (wrong order of arguments in a function) - create_projdata_template sets modality to PET
- handle filesnames with multiple dots - have sensible voxel-sizes for tangential and axial dimensions
It is highly recommended to use these as opposed to fwdtest and bcktest in your scripts. Note the different order of the arguments!
- removed a few hard-wired filenames in simulate_data.sh (and use its arguments properly) - fixed creation of randoms such that the same command would be usable for zero randoms
- moved scripts and *txt files one level up - moved samples, examples and samples/PET_simulation to new sub-dir examples in the top-level directory - created CMakeLists.txt in top-level directory (and moved PROJECT and other main statements there from src/CMakeLists.txt). - moved CMake helper files to src/cmake, adjust many CMakeLists.txt to rely on module path for these files (by no longer specifying location using paths)
…version warnings though)
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Changes in this pull request
This PR introduces nested Patlak and generalized Patlak OSMAPOSL (POSMAPOSL & GPOSMAPOSL) reconstruction.
In addition, nested Richardson-Lucy Motion Deconvolution Image Reconstruction (RLMCIR) is featured, too.
Testing performed
Related issues
Checklist before requesting a review
documentation/release_XXX.mdhas been updated with any functionality change (if applicable)Contribution Notes
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