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chore: bump memote-docker#1008

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edkerk merged 5 commits intodevelopfrom
chore/bump-memote-docker
Mar 23, 2026
Merged

chore: bump memote-docker#1008
edkerk merged 5 commits intodevelopfrom
chore/bump-memote-docker

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@mihai-sysbio
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Main improvements in this PR:

As MEMOTE has seen new releases, this PR updates the Docker image accordingly.

I hereby confirm that I have:

  • Tested my code on my own computer for running the model
  • Selected develop as a target branch
  • Any removed reactions and metabolites have been moved to the corresponding deprecated identifier lists

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github-actions Bot commented Jan 3, 2026

This PR has been automatically tested with GH Actions. Here is the output of the MACAW test:

Starting dead-end test...
- Found 1383 dead-end metabolites.
- Found 1139 reactions incapable of sustaining steady-state fluxes in either direction due to these dead-ends.
- Found 1368 reversible reactions that can only carry steady-state fluxes in a single direction due to dead-ends.
Starting duplicate test...
- Skipping redox duplicates because no redox_pairs and/or proton_ids were provided.
- Found 379 reactions that were some type of duplicate:
- 0 were completely identical to at least one other reaction.
- 13 involve the same metabolites but go in the opposite direction or have the opposite reversibility as at least one other reaction.
- 379 involve the same metabolites but with different coefficients as at least one other reaction.

This and a more detailed output from MACAW are also committed to data/macawResults/.

Note: In the case of multiple test runs, this post will be edited.

…docker

# Conflicts:
#	data/testResults/README.md
#	data/testResults/macaw_summary.md
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@edkerk edkerk merged commit 60c4f65 into develop Mar 23, 2026
1 of 6 checks passed
@edkerk edkerk deleted the chore/bump-memote-docker branch March 23, 2026 19:03
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2 participants