Discussions

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  Human 2.0

  FamkeKlop started Oct 23, 2025 in General

  

  

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  Using ftINIT with proteomics and gene sets

  NantiaL asked Jul 31, 2025 in Q&A · Unanswered

  

  

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  Error in ftINIT (line 283) Failed to find enough good solution within the time frame MIPGap:Inf

  NayeonPark99 asked Jul 18, 2025 in Q&A · Unanswered

  

  

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  Tracking changes to reactions flagged by MACAW in Human1 v1.19

  HNB13 started May 14, 2025 in General

  

  

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  Error during following Human-GEM guide: Step 3 (Check tasks) issue

  sangmok920622 asked Oct 7, 2024 in Q&A · Unanswered

  

  

  

  

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  # of genes in the model

  JOELROJAS2022 asked Apr 4, 2025 in Q&A · Unanswered

  

  

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  LLM/ChatGPT for GPR curation

  wshao1 started Feb 7, 2025 in General

  

  

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  getINITModel2

  fgualdr asked Feb 17, 2021 in Q&A · Answered

  

  

  

  

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  Normalising fluxes between reactions

  manas-kohli asked Nov 27, 2024 in Q&A · Unanswered

  

  

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  Question about bounding the model and downstream analysis with ftINIT algorithm

  Edward-NiAn started Aug 8, 2024 in General

  

  

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  Warning when comparing tasks between GEMs using compareMetabolicModels

  CKTJames asked Aug 7, 2024 in Q&A · Answered

  

  

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  Objective function choice for FBA for non-malignant tissue

  manas-kohli asked Jul 1, 2024 in Q&A · Answered

  

  

  

  

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  Potential New Automated Tests

  Devlin-Moyer started Jun 18, 2024 in Ideas

  

  

  

  

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  why there is only one result for one tissue-specific-GEM?

  Joyjoyjoyc asked Jun 25, 2024 in Q&A · Unanswered

  

  

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  some metabolicTasks_Essential Fail when running prepHumanModelForftINIT

  yasamantaebi started Mar 6, 2024 in General

  

  

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  Are these genes mismatched in Human-GEM 1.18.0 version?

  Jade-Jung started Feb 19, 2024 in General

  

  

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  Using ftINIT with batch-corrected scRNA-seq data

  kota-2000 asked Dec 1, 2023 in Q&A · Unanswered

  

  

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  The universality of metabolic tasks list

  bug

  yangjingyu1108 asked Nov 21, 2023 in Q&A · Answered

  

  

  

  

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  Guidelines and Principles for PR review

  mihai-sysbio started Nov 14, 2023 in Ideas

  

  

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  Building models using tINIT on microarray data

  manas-kohli asked Nov 1, 2023 in Q&A · Unanswered

  

  

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  CPM normalization on pooled bootstrapped scRNA-seq data

  Jade-Jung asked Oct 12, 2023 in Q&A · Answered

  

  

  

  

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  Adding artificial sink reactions

  manas-kohli asked Aug 22, 2023 in Q&A · Answered

  

  

  

  

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  Error in ftINIT (Failed to find good enough solution within the time frame. MIPGap: Inf)

  wontfix

  hazelweeling asked Apr 17, 2023 in Q&A · Unanswered

  

  

  

  

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  prepHumanModelForftINIT issue when working with MouseGEM

  rsango6 asked Aug 14, 2023 in Q&A · Answered

  

  

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  Accurate and complete representation of mitochondrial intermembrane compartment [i]

  haowang-bioinfo started Aug 13, 2023 in Ideas

  

  

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