Improved Superficial velocity calculation with paraview

.github/workflows/build_docs.yml

@@ -11,7 +11,10 @@ jobs:
 
   build_docs:
     runs-on: ubuntu-latest
-
+    defaults:
+      run:
+        shell: bash -l {0}
+        working-directory: ${{github.workspace}}
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -21,9 +24,18 @@ jobs:
         with:
           python-version: '3.10'
           cache: 'pip'
-
+
+      - name: Set up Miniconda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          activate-environment: test-env
+          python-version: ${{matrix.python-version}}
+          channels: conda-forge
+          channel-priority: strict
+
       - name: Install dependencies
         run: |
+          conda install -y -c conda-forge paraview
           python -m pip install --upgrade pip
           pip install -e .
           pip install sphinx sphinx_rtd_theme sphinx-autodoc-typehints

.github/workflows/ci.yml

@@ -30,6 +30,7 @@ jobs:
         os: ['ubuntu-latest']
     defaults:
       run:
+        shell: bash -l {0}
         working-directory: ${{github.workspace}}
     steps:
       - uses: actions/checkout@v4
@@ -56,17 +57,30 @@ jobs:
         os: ['ubuntu-latest', 'macos-latest']
     defaults:
       run:
+        shell: bash -l {0}
         working-directory: ${{github.workspace}}
+
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
           python-version: ${{matrix.python-version}}
+
+      - name: Set up Miniconda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          activate-environment: test-env
+          python-version: ${{matrix.python-version}}
+          channels: conda-forge
+          channel-priority: strict
+
       - name: Install dependencies
         run: |
+          conda install -y -c conda-forge paraview
           pip install --upgrade pip
           pip install .
           pip install pytest
+
       - name: Test
         run: pytest .
 
@@ -80,17 +94,29 @@ jobs:
         os: ['ubuntu-latest']
     defaults:
       run:
+        shell: bash -l {0}
         working-directory: ${{github.workspace}}
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
           python-version: ${{matrix.python-version}}
+
+      - name: Set up Miniconda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          activate-environment: test-env
+          python-version: ${{matrix.python-version}}
+          channels: conda-forge
+          channel-priority: strict
+
       - name: Install dependencies
         run: |
+          conda install -y -c conda-forge paraview
           pip install --upgrade pip
           pip install nrel-bird
           pip install pytest
+
       - name: Test
         run: pytest .
 
@@ -104,6 +130,7 @@ jobs:
         os: ['ubuntu-22.04']
     defaults:
       run:
+        shell: bash -l {0}
         working-directory: ${{github.workspace}}
     steps:
       - uses: actions/checkout@v4
@@ -113,10 +140,21 @@ jobs:
       - uses: gerlero/setup-openfoam@v1
         with:
           openfoam-version: 9
+
+      - name: Set up Miniconda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          activate-environment: test-env
+          python-version: ${{matrix.python-version}}
+          channels: conda-forge
+          channel-priority: strict
+
       - name: Install dependencies
         run: |
+          conda install -y -c conda-forge paraview
           pip install --upgrade pip
           pip install .
+
       - name: Compile solver
         run: |
           cd OFsolvers/birdmultiphaseEulerFoam

.github/workflows/codecov.yml

@@ -15,6 +15,7 @@ jobs:
     runs-on: ubuntu-latest
     defaults:
       run:
+        shell: bash -l {0}
         working-directory: ${{github.workspace}}
     steps:
       - name: Checkout
@@ -26,8 +27,17 @@ jobs:
           python-version: '3.13'
           cache: 'pip'
 
+      - name: Set up Miniconda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          activate-environment: test-env
+          python-version: ${{matrix.python-version}}
+          channels: conda-forge
+          channel-priority: strict
+
       - name: Install dependencies
         run: |
+          conda install -y -c conda-forge paraview
           pip install --upgrade pip
           pip install pytest
           pip install pytest-cov

.github/workflows/deploy_docs.yml

@@ -11,6 +11,10 @@ jobs:
 
   build_deploy_docs:
     runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+        working-directory: ${{github.workspace}}
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
@@ -23,9 +27,18 @@ jobs:
           python-version: '3.10'
           cache: 'pip'
 
+      - name: Set up Miniconda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          activate-environment: test-env
+          python-version: ${{matrix.python-version}}
+          channels: conda-forge
+          channel-priority: strict
+
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
+          conda install -y -c conda-forge paraview
+          pip install --upgrade pip
           pip install -e .
           pip install sphinx sphinx_rtd_theme sphinx-autodoc-typehints
 

README.md

@@ -13,7 +13,7 @@ bash run.sh
 ## Installation of python package for developers
 
 ```bash
-conda create --name bird python=3.10
+conda create -c conda-forge --name bird python=3.10 paraview
 conda activate bird
 git clone https://github.com/NREL/BioReactorDesign.git
 cd BioReactorDesign
@@ -23,7 +23,7 @@ pip install -e .
 ## Installation of python package for users
 
 ```bash
-conda create --name bird python=3.10
+conda create -c conda-forge --name bird python=3.10 paraview
 conda activate bird
 pip install nrel-bird=={version}
 ```

bird/postprocess/data_conditional_mean/constant/polyMesh/boundary

@@ -0,0 +1,40 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     | Website:  https://openfoam.org
+    \\  /    A nd           | Version:  9
+     \\/     M anipulation  |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    format      ascii;
+    class       polyBoundaryMesh;
+    location    "constant/polyMesh";
+    object      boundary;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+3
+(
+    inlet
+    {
+        type            patch;
+        nFaces          200;
+        startFace       409180;
+    }
+    outlet
+    {
+        type            patch;
+        nFaces          740;
+        startFace       409380;
+    }
+    walls
+    {
+        type            wall;
+        inGroups        List<word> 1(wall);
+        nFaces          8580;
+        startFace       410120;
+    }
+)
+
+// ************************************************************************* //