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feat: Qiacuity dPCR - add handle for first column containing the well#1129

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joshua-benchling merged 2 commits intomainfrom
jherna/qiacuity-handle-well-first-column
Dec 17, 2025
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feat: Qiacuity dPCR - add handle for first column containing the well#1129
joshua-benchling merged 2 commits intomainfrom
jherna/qiacuity-handle-well-first-column

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Key Differences Between Current and New File Format

Field Current Format New Format (example04)
Well column Unnamed first column Explicit Well column
Target Target Target (Name)
Concentration Concentration (copies/µL) or Conc. [copies/µL] Conc. [cp/µL] (dPCR reaction)
Partitions valid Partitions (valid) Partitions (Valid) (capitalized)
Partitions positive Partitions (positive) Partitions (Positive) (capitalized)
Partitions negative Partitions (negative) Partitions (Negative) (capitalized)
IC field IC Target (IC)
Control type Control type Target (Control)

Added column name aliases to handle both current and new formats

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@james-leinas james-leinas left a comment

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@joshua-benchling -- ASM LGTM

Noticed our handling of plate_well_count is currently set to 0 for all cases but this seems like a follow-up task we can complete.

@joshua-benchling joshua-benchling merged commit 7495cc5 into main Dec 17, 2025
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@joshua-benchling joshua-benchling deleted the jherna/qiacuity-handle-well-first-column branch December 17, 2025 19:33
nathan-stender added a commit that referenced this pull request Feb 4, 2026
### Added

- Mass spectrometry mapper (#1122)
- Qiacuity dPCR - add handle for first column containing the well
(#1129)

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Co-authored-by: Claude Opus 4.1 <noreply@anthropic.com>
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3 participants