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bug-fix: stop codons not registered when parsing alignments for metap… #274

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bug-fix: stop codons not registered when parsing alignments for metap… #274

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bug-fix: stop codons not registered when parsing alignments for metap…
thepatientwait Dec 12, 2025
9ea58ce
removed old TODO comment
thepatientwait Dec 12, 2025
5a5a0cc
Merge remote-tracking branch 'upstream/main'
thepatientwait Feb 13, 2026
f059884
Merge branch 'wwood:main' into main
thepatientwait Apr 1, 2026
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Empty file modified singlem/diamond_spkg_searcher.py
100644 → 100755
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2 changes: 1 addition & 1 deletion singlem/metagenome_otu_finder.py
100644 → 100755
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Original file line number Diff line number Diff line change
Expand Up @@ -99,7 +99,7 @@ def find_windowed_sequences(self,

def _find_lower_case_columns(self, protein_alignment):
lower_cases = [False]*len(protein_alignment[0].seq)
lower_case_chars = re.compile(r'[a-z]')
lower_case_chars = re.compile(r'[a-z\*]')
for pro in protein_alignment:
for i, aa in enumerate(pro.seq):
if lower_case_chars.match(aa):
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