GISAID_Pipeline_Functions

Scripts used to determine variants in SARS-CoV-2 Sequences from the Global Sharing of All Influenza Data (GISAID) database.

Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
.gitattributes		.gitattributes
Clustal_All.sh		Clustal_All.sh
Find_Reference_Clusters.R		Find_Reference_Clusters.R
MSA_Reader.py		MSA_Reader.py
Multi_Panel_Plot.py		Multi_Panel_Plot.py
Plotting_Functions.py		Plotting_Functions.py
Protein_File_Splitter.py		Protein_File_Splitter.py
Pymol_Strings.py		Pymol_Strings.py
README.md		README.md
Seq_Tools.py		Seq_Tools.py
Sequence_Counter.py		Sequence_Counter.py
Sequence_Filter.py		Sequence_Filter.py
Time_Series.py		Time_Series.py
__init__.py		__init__.py
alignment_tools.py		alignment_tools.py
rename_to_ORF.sh		rename_to_ORF.sh

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