1.4.2

v1.4.2 - [March 22, 2024]

• Biodiverse container update (4.99_2)
  • Docker and Singularity definition files: v.1.5.0
  • Biodiverse changelog: v.4.99_002

Full Changelog: 1.4.1...1.4.2

1.4.1

v1.4.1 - [January 30, 2024]

Container updates.
Full Changelog: 1.4.0...1.4.1

1.4.0

v1.4.0 - [July 21, 2023]

• Added: Estimation of Hurlbert's ES index (a measure of species diversity that accounts for sample size);
• Changes: The pseudo-abundance of species is now determined by the number of GBIF records per grid cell;
• Fixed: The Open Tree has implemented significant updates to the API that disrupted existing integrations;

1.3.0

1.3.0 - [May 25, 2023]

• Biodiverse updated to v4.3
  Biodiverse changelog:
  • Version 4.3
  • Version 4.2
• Added: maxyear parameter for occurrence filtering based on the upper bound of collection year

1.2.0

1.2.0 - [Apr 11, 2023]

• Added: spatially-constrained randomizations;
• Added: spatial filtering using user-supplied polygons;
• Added: CANAPE output in tabular format from Biodiverse;
• Added: leaflet_canapesuper parameter (for 3-class or 4-class endemism types in CANAPE);
• Added: geographic coordinates of H3 cells to the output table;
• Added: leaflet_mapshots script;
• Changes: previously, the spatial unit was categorical (H3 grid cell); to spatially constrain records, now we use geographic coordinates of grid cells;
• Changes: record counts, derived dataset, and additional filtering now re-use the same code base;
• Changes: screen output is less verbose now;
• Changes: PRNG randomization seeds are explicit now;
• Fixed: Number of Biodiverse randomizations per thread;
• Fixed: CANAPE index requirements;
• Fixed: antimeridian issue in static visualization;
• Fixed: record counts and derived dataset take polygon-filtering into account;

1.0.0

1.0.0 [Jan 27, 2023]

• First stable release

0.0.2

PhyloNext v.0.0.2

0.0.1_prior_refactoring

The pipeline works locally, but is not optimized to run in the cloud (e.g., on Azure).