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1. BactiChroHMM BactiChroHMM Public

   A tool that utilizes Hidden Markov Models to infer bacterial chromatin states from epigenomic data

   Jupyter Notebook

2. Lsr2_LsrL_S_venezuelae_analyses Lsr2_LsrL_S_venezuelae_analyses Public

   Code and reproducible scripts for HMM-based chromatin state inference and Frontier index analyses from the Lsr2/LsrL multi-omics study in Streptomyces venezuelae

   Python

3. ShapeME ShapeME Public

   Forked from freddolino-lab/ShapeME

   Algorithm to discover structural motifs informative of expression patterns

   HTML