Initial website optimization & first post added (see: https://github.…

.Rprofile

@@ -1,3 +1,4 @@
+source("renv/activate.R")
 # REMEMBER to restart R after you modify and save this file!
 
 # First, execute the global .Rprofile if it exists. You may configure blogdown
@@ -17,8 +18,8 @@ options(
   blogdown.knit.on_save = TRUE,
   # build .Rmd to .md; to build to .html (via Pandoc), set this option to 'html'
   blogdown.method = 'markdown',
-  blogdown.hugo.version = "0.134.2"
+  blogdown.hugo.version = "0.135.0"
 )
 
 # fix Hugo version
-options(blogdown.hugo.version = "0.134.2")
+options(blogdown.hugo.version = "0.135.0")

assets/css/common/cta.css

@@ -0,0 +1,34 @@
+.call-to-action {
+  margin: 2em 0;
+  text-align: center;
+}
+
+.cta-text {
+  display: inline-block;
+  padding: 1.5em;
+  border: 2px solid #007acc;
+  border-radius: 8px;
+  background-color: #f0f8ff;
+}
+
+.call-to-action p {
+  font-size: 1em;
+  color: #003366;
+  margin: 0 0 1em;
+}
+
+.call-to-action a {
+  color: #007acc;
+  text-decoration: none;
+}
+
+.call-to-action a:hover {
+  text-decoration: underline;
+}
+
+.cta-logo {
+  display: block;
+  margin: 1em auto 0;  
+  max-width: 300px;     
+  height: auto;         
+}

assets/css/common/post-single.css

@@ -34,23 +34,27 @@
 
 .post-content {
     color: var(--content);
+    text-align: justify;
 }
 
 .post-content h3,
 .post-content h4,
 .post-content h5,
 .post-content h6 {
     margin: 24px 0 16px;
+    text-align: justify;
 }
 
 .post-content h1 {
     margin: 40px auto 32px;
     font-size: 40px;
+    text-align: justify;
 }
 
 .post-content h2 {
     margin: 32px auto 24px;
     font-size: 32px;
+    text-align: justify;
 }
 
 .post-content h3 {

config.yaml

@@ -13,20 +13,57 @@ services:
     id: "G-3MKP9QPBP1"
 menu:
   main:
-    - name: About
+    - identifier: about
+      name: About us
       url: /about/
-    - name: GitHub
-      url: https://github.com/ttscience
+      weight: 1
+    - identifier: authors
+      name: Authors
+      url: /authors/
+      weight: 2
+    - identifier: archives
+      name: Archive
+      url: /archive/
+      weight: 3
+    - identifier: search
+      name: Search
+      url: /search/
+      weight: 4
 params:
+  env: production
+  math: true
   MathJaxCDN: //cdnjs.cloudflare.com/ajax/libs
-  MathJaxVersion: 2.7.5
+  MathJaxVersion: 3.2.2
   description: Development blog of Transition Technologies Science Clinical Data Science Team.
-  favicon: favicon.ico
   defaultTheme: auto
   ShowReadingTime: true
+  ShowBreadCrumbs: true
+  ShowPostNavLinks: true
+  ShowCodeCopyButtons: true
   homeInfoParams:
-    Title: "Hi there 👋"
-    Content: "Welcome to the TT Science Development Blog! Here, you'll find insights, tutorials, and updates about our work in clinical data science, including R, Python, and optimization techniques. Explore our posts, check out our projects on GitHub, or learn more about our team."
+    Title: "Hey there, data enthusiasts! 👋"
+    Content: "Here at TT Science, we are a dynamic team of individuals — like trees in a [random forest](https://scikit-learn.org/stable/modules/generated/sklearn.ensemble.RandomForestRegressor.html) 🌳🌲 — each bringing our own unique strengths and perspectives to the table. While we share a common goal of advancing clinical data science, it’s our diversity that makes us truly special! <br><br> 🌈 Join us on this exciting journey 🚀 as we share insights, tutorials, and updates on our innovative projects involving R, Python, and biostatistics. 💻🔍 Explore our posts, dive into our GitHub projects 📂, and get to know the passionate minds behind our work. Together, we’re harnessing the power of data to create impactful solutions in healthcare. 💡💖 Welcome to our forest of knowledge! 🌳🌟"
+  assets:
+    favicon: "favicon.ico"
+    favicon16x16: "favicon-16x16.png"
+    favicon32x32: "favicon-32x32.png"
+    apple_touch_icon: "apple-touch-icon.png"
+  socialIcons:
+    - name: "Company website"
+      url: "https://ttsi.com.pl/"
+    - name: "GitHub"
+      url: "https://github.com/ttscience"
+    - name: "LinkedIn"
+      url: "https://www.linkedin.com/company/transition-technologies-science-sp-z-o-o/"
+  fuseOpts:
+    isCaseSensitive: false
+    shouldSort: true
+    location: 0
+    distance: 1000
+    threshold: 0.4
+    minMatchCharLength: 0
+    keys: ["title", "permalink", "summary", "content"]
+  ShowShareButtons: true
 markup:
   highlight:
     noClasses: false # Use classes for more customizable styling via CSS
@@ -36,3 +73,8 @@ markup:
   goldmark:
     renderer:
       unsafe: true
+outputs:
+  home:
+    - HTML
+    - RSS
+    - JSON

content/about.md

@@ -1,6 +1,17 @@
 ---
-date: "2016-05-05T21:48:51-07:00"
-title: About
+date: "2024-10-01T16:48:51-07:00"
+title: About Us
+disableComments: true
 ---
 
-This is a "hello world" example website for the [**blogdown**](https://github.com/rstudio/blogdown) package. The theme was forked from [@jrutheiser/hugo-lithium-theme](https://github.com/jrutheiser/hugo-lithium-theme) and modified by [Yihui Xie](https://github.com/yihui/hugo-lithium).
+We’re writing here as practitioners in clinical statistics, data science, and machine learning. Our team consists of Biostatisticians, Data Scientists, Bioinformaticians and Developers. We’re not marketers—we’re the ones in the trenches, working with data every day to solve real-world problems. We support researchers, scientists, and hospitals in medical and life sciences research projects by delivering relevant documentation, software, and statistical reports, utilizing programming languages such as R and Python.
+
+“Data for good” is in our DNA. We’re passionate about doing meaningful work, which includes engaging in open-source projects. We don’t just crunch numbers; we aim to make a positive impact through our expertise. Our main goals include supporting investigators in the planning, execution, and finalization of clinical trials—covering tasks such as sample size calculations, study design, developing clinical trial protocols in compliance with EMA and FDA guidelines, creating Statistical Analysis Plans (SAPs), validating data, and generating statistical reports — as well as developing dedicated software, including applications such as to facilitate the analysis and validation of medical data.  
+
+We believe in science and want innovative scientists to tackle the questions and challenges of today’s world. We want scientists to always be able to rely on data—because we all rely on them. Our partnership approach is rooted in the scientific method—we combine data, our clients’ expertise, and our competencies to achieve the best results. 
+
+Our mission is to share knowledge with the broader community engaged in medical IT software development, clinical research, and the analysis of medical and biological data, as well as those just beginning their careers in these fields. Through our published content, we aim to showcase solutions for software development and provide guidance to researchers, particularly in the areas of statistics, machine learning, and the regulatory frameworks of the European Medicines Agency (EMA) and the U.S. Food and Drug Administration (FDA).
+
+If you want to check our official page, visit Transition Technologies Science—you’ll learn that we provide software, data science services, and offer analytical support at every stage of clinical trials.
+
+Reach out to us to explore the world of data - our email is office@ttsi.com.pl

content/archives.md

@@ -0,0 +1,6 @@
+---
+title: "Archive"
+layout: "archives"
+url: "/archive/"
+summary: archives
+---

content/authors/kamil-pytlak/_index.md

@@ -0,0 +1,6 @@
+---
+name: Kamil Pytlak
+img: kamil-pytlak.jpg
+linkedin: https://www.linkedin.com/in/kamil-pytlak/
+bio: At TTSI, I am a Junior Biostatistician with a broad interest in data science and machine learning, particularly in cheminformatics applications using Python and R. I enjoy self-development literature, mountain climbing, and cycling.
+---