Clarify non-span-normalised pca#3359
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hyanwong merged 1 commit intotskit-dev:mainfrom Jan 6, 2026
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Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #3359 +/- ##
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Coverage 89.76% 89.76%
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Files 29 29
Lines 31292 31292
Branches 5738 5738
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Hits 28089 28089
Misses 1794 1794
Partials 1409 1409
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petrelharp
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Comments resolved, ready to merge if you tick as "approved", @petrelharp. Thanks! |
petrelharp
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| between sample :math:`i` and sample :math:`j`, then by default this returns | ||
| the top ``num_components`` eigenvectors of :math:`M`, so that | ||
| Concretely, take :math:`M` as the matrix of non-span-normalised | ||
| branch-based genetic relatedness values, for instance obtained by |
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| branch-based genetic relatedness values, for instance obtained by | |
| genetic relatedness values, for instance obtained by |
petrelharp
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With these comments, I approve.
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Whoops - I don't think you applied the suggested changes. |
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Darn it, sorry. Thanks for the follow-up PR. |
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Fixes #3358