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@trklab-metabarcoding

trklab-metabarcoding

Data and software resources for biodiversity genomics

Hi there 👋

🙋‍♀️ What is your organization all about? The Kartzinel Lab is all about leveraging data science and genomic data to make a positive impact on wildlife and the environment. We are perhaps best known for our work with dietary DNA metabarcoding, which enables us to identify precisely what animals eat based on the DNA of food they consume.

🌈 How can the community get involved? We are happy to discuss project ideas or share our experience in this field. Please enjoy our GitHub resources, visit our lab website (www.kartzinellab.com), and reach out if you'd like to explore research or collaborative opportunities.

👩‍💻 What to know: Our software and code tends to be tailored to the Brown University computing cluster (named Oscar). If you are at Brown, it is easy to use. If you are not at Brown, you can gain access to Oscar by collaborating with lab (visit our website or contact the PI for more information). You may also wish to contact your Institution's computing team to adapt these open-source resources to your computing environment.

🍿 Things to enjoy: Lab website: www.kartzinellab.com

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  1. MolEco-MEC-24-1288 MolEco-MEC-24-1288 Public

    Coding resources for publication MEC-24-1288 in Molecular Ecology

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  2. obitools2-preprocessing-pipeline obitools2-preprocessing-pipeline Public

    Templating to set up a DNA metabarcoding analysis

  3. obitools2-global-db obitools2-global-db Public

    Global database creation using OBITools2

  4. obitools2-localdb-build obitools2-localdb-build Public

    Building a local reference library from BOLD

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  5. obitools2-taxonomy-assignment obitools2-taxonomy-assignment Public

    Assigning taxonomy to demultiplexed data

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