MFT-Analyses

This repo contains scripts and directions on how to reproduce the analyses contained in the Min Frame Transformation paper

More specific information

Please see the READMEs in each directory for more specific information:

• Figure 1 (theoretical figure): see Figure1
• Figure 2 (drawing created externally)
• Figure 3 (adenovirus/measles comparisons): See Figures34
• Figure 4 (covid/ebola comparisons): See Figures34
• Figure 5 (star phylogeny simulated): See Figure5
• Figure 6 (real phylogeny simulated): See Figure6

For appendix tables, the steps to reconstruct those tables can be found in:

• Appendix Figure 1: (drawing created externally)
• Appendix Table 1 (masking rates + entropies): See Table 1
• Appendix Table 2 (optimized versions): See Table 2
• Appendix Table 3 (specific optimizations): See Table 3
• Appendix Figure 2-3 (more detail on the multi-MUMs for measles/covid): See Figure34