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Update vignettes#276

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ehwenk merged 14 commits intomasterfrom
update-vignettes
Mar 26, 2026
Merged

Update vignettes#276
ehwenk merged 14 commits intomasterfrom
update-vignettes

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@ehwenk
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@ehwenk ehwenk commented Mar 25, 2026

  • updated README and vignettes about APCalign
  • small changes to new and revised functions following reviews

ehwenk added 6 commits March 24, 2026 20:40
also corrected inconsistency in synonym function
render README
A collection of edits suggested by @dcol2804:

- `native_anywere_in_australia` doesn't need the `include_infrataxa` parameter. It just needs the parameter set to T when it calls `create_species_state_origin_matrix`. If someone submits a infraspecific taxon name to the function, they'll expect to learn whether it is native or not.
- `synonyms_for_accepted_names` now includes a message if the name submitted isn't an accepted name
- stray character remove
- specify that `synonyms_for_accepted_names` is for species/infraspecies, not genera or families (thanks Ruby)
also per @dcol2804 suggestion, changed columns slightly in synonym function

added additional tests
@ehwenk ehwenk requested a review from wcornwell March 25, 2026 07:31
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wcornwell commented Mar 25, 2026

some very recent changes from hadley to how links work here: https://github.com/r-lib/roxygen2 maybe get most recent (development) version and re-do devtools::document(), so we don't quickly go out-of-date? https://github.com/r-lib/roxygen2/blob/main/NEWS.md

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test failing but i'm not sure if it's a regression...have a look tomorrow @ehwenk

@ehwenk ehwenk merged commit 160f141 into master Mar 26, 2026
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@ehwenk ehwenk deleted the update-vignettes branch March 26, 2026 04:34
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2 participants