Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.
(Semester 4) Intelligence of Biological Systems - End Semester Project
Graph-based methods for detecting horizontal gene transfer (HGT) candidates in bacterial proteomes using sequence similarity and network analysis, developed for HUJI’s Algorithms in Computational Biology course (76558)
Phases ancestry blocks in allopolyploid genomes with k-mer, SNP, and autoencoder methods in one modular toolkit
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