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scgpt

Here are 5 public repositories matching this topic...

helicalAI / helical

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

Updated Apr 20, 2026
Python

chansigit / scGPT-modern

A drop-in modernization of bowang-lab/scGPT for Python 3.12 + torch 2.6 + flash-attn 3 (H100 sm_90a native). Original pretrained weights load unmodified — compatible, more modern, faster.

bioinformatics rna-seq deep-learning genomics pytorch hopper transcriptomics single-cell single-cell-genomics llm foundation-model flash-attention h100 scgpt

Updated Apr 10, 2026
Jupyter Notebook

goncalo-aroeira / thesis_implementation

Reproducible pipelines comparing bulk RNA-seq, single-cell (pseudobulk), and scFM embeddings (scGPT, scFoundation) for per-drug response prediction in cancer cell lines.

benchmark bioinformatics random-forest xgboost elastic-net single-cell-rna-seq machin bulk-rna-seq drug-response-prediction foundation-models scgpt

Updated Oct 15, 2025
Jupyter Notebook

Biodyn-AI / casual-intervention

Causal token interventions for validating gene regulatory network inference from single-cell foundation models

single-cell causal-inference gene-regulatory-networks mechanistic-interpretability scgpt

Updated Apr 13, 2026
Python

avtoservice / avtoservice.github.io

Автосервис в Минске. Качественный ремонт авто.

scgpt easyrtspserver avtoservice service-html service-css service-js archive-library

Updated Mar 2, 2026
HTML

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