Emory BMI GSoC Project Ideas

Supporting code for the GX Dataset

Openwater's Open-Source Neuromodulation Software

Neuromodulatory Control Networks (NCNs), a novel LLM architectural modification inspired by the neuromodulatory systems in the vertebrate brain.

Openwater's Open-Source Neuromodulation Hardware

focused ultrasound toolbox

Multidigraph learning (MDGL) for training recurrent spiking neural networks

A 3D Slicer extension for Openwater’s OpenLIFU (Low Intensity Focused Ultrasound) research platform, providing an advanced interface to features found in the OpenLIFU app.

Python implementation of the NICE & SONIC models for multiple neuron types, along with command-line scripts for rapid simulations.

Python port of the PARRM algorithm for removing periodic artefacts from signals.

Image-to-image deep learning framework for MRI to porosity map translation

ANML: A Neuromodulated Meta-Learning algorithm (using the `higher` framework)

Python+NEURON framework enabling the creation of morphologically-structured neuron models incorporating the SONIC paradigm.

Graphical user interface for planning and controlling Open-LIFU sonications

Control Software for the OpenLIFU Verification Tank

Python scripts to generate the data and figures of the morphoSONIC paper by Lemaire et al. (2021).

A repository implementing a biologically inspired spiking neural network for psychological profiling. This project uses my own "QLIF-Neurons" by incorporating feedback and cross‐connections among key brain regions (e.g., prefrontal cortex, amygdala, hippocampus, thalamus, and striatum) and integrates text‐based emotion analysis.

Code used to generate the results in "A unified model library maps how neuromodulation reshapes the excitability landscape of neurons across the brain"

Synaptic vesicle fusion model (Church et al 2021)

Openwater Phantoms