A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.
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Oct 8, 2025 - R
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metaphlan4
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A comprehensive platform for analyzing microbiome data from the LucKi cohort, featuring machine learning models for age group prediction from gut microbiome taxonomic profiles. The platform includes both interactive Streamlit web application and Jupyter notebook-based analysis.
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Jan 30, 2026 - Jupyter Notebook
Integrated 16S + shotgun metagenomics workflow for kvass fermentation (QIIME2, MetaPhlAn4, Kraken2, HUMAnN3, DRAM2) with reproducible outputs.
shell bash bioinformatics r nextflow shotgun hpc metagenomics dram kraken fermentation microbiome-analysis kaiju qiime2 bracken msc-dissertation humann3 metaphlan4 microbiome-metabolism kvass
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Feb 28, 2026 - Shell
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