CoreTracker, a codon reassignment tracker

Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)

The Hill-ADN Cryptography project combines Hill cipher methods with DNA encryption, offering a novel approach for improved data security. It includes binary to DNA conversion, amino acid translation, and Hill cipher encryption, with the decryption process addressing genetic code ambiguity challenges.

Codon substitution models for DNA

Prediction of genes in genomes with ambiguous stop codons

THREE.JS GENETIC CODE NEUTRAL NETWORK EXPLORER

This repository contains ready-to-use files of the genetic codes downloaded from the National Center for Biotechnology Information (NCBI).

This repository contains a simple python library to convert binary data to genetic codes and further genetic codes back to binary data.

Triplet Codon Block Shannon Entropy (TCBShE) in terms of GC(1,2,3)% equates to Napier's Constant for Model Organisms, and Harmonically Averages to same approximately: a Penta-Clado-genic Quantitative Survey across ~14.45 million Transcripts Clustered by 1118 Species

A DNA database is a computer-based system containing biological information, or 'Bio-data,' regulated and maintained by the government or controlled by a private entity.

A modern, responsive, and interactive bioinformatics web application built with React, Vite, and Tailwind CSS v4. Seamlessly translate and reverse-translate DNA, RNA, and Protein sequences in real-time with automatic sequence detection, clipboard copy, and file download support.

A Python-based bioinformatics tool to reverse-engineer and decode unknown Martian genetic sequences. Features include statistical base-pairing analysis, sliding window alignment algorithms, and elemental protein translation.

This repository implements the pseudovolume — a rigid, 2,880-value tensor associated to each positive rational scalar, indexed by the sixty-four hexagrams of the Yijing. The construction recovers the nine-node He Tu / Luo Shu arrangement and identifies the five Wuxing phases with the vertices of a regular 4-simplex in four-dimensional space.

Autonomous Systems Engineering Project Foundry. v10.1 Master Engine with System Bible and Double Consent.

This repository contains ready-to-use files of the genetic codes downloaded from the National Center for Biotechnology Information (NCBI).

An R package to compute the autimorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group as described in the paper [Genomic Abelian Finite Groups](https://www.biorxiv.org/content/10.1101/2021.06.01.446543v2)

My Python code that uses the A* algorithm to generate the desired genetic code.