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foodborne-pathogens

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genpat-it / chewcall

Fast allele caller for cgMLST/wgMLST schemas, compatible with chewBBACA. 6-10x faster with SIMD Smith-Waterman (parasail).

rust bioinformatics genomics smith-waterman mlst cgmlst wgmlst allele-calling parasail foodborne-pathogens

Updated Apr 14, 2026
Rust

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