Python script to extract and visualize AMR data from AMRFinderPlus outputs, generating detailed reports and binary heatmaps
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Updated
Oct 23, 2024 - Python
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amrfinderplus
Here are 3 public repositories matching this topic...
AI-assisted pipeline for mining candidate Staphylococcus invasome and virulence-associated genes from assembled genome FASTA files.
python bash bioinformatics pipeline genomics reproducible-research conda virulence abricate staphylococcus bacterial-genomics bakta amrfinderplus invasome vfdb
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May 27, 2026 - Python
AMR prediction pipeline for Acinetobacter baumannii using whole-genome sequencing and machine learning (Random Forest, Logistic Regression) with SHAP-based gene importance analysis.
machine-learning logistic-regression feature-engineering genome-analysis antibiotics random-forest-classifier bacterial-genomes antimicrobial-resistance shap genome-features amrfinderplus resistance-phenotype
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May 22, 2026 - Jupyter Notebook
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