Template for the variant calling pipeline as part of the nextflow course. The main branch contains the template, while the full branch contains the finished pipeline
This implementation differs from https://github.com/glebus-sasha/nextflow-course-template by qcontrol and trimming processes. FastP tool was substituted by FastQC in qcontrol. In onreder to trimm the adapters, trimmomatic is used within trimming. The implementation tested on MacBook Air M4 using docker to run containers.