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feat: LLM-Agnostic MCP Server with Peer Review Integration#30
ipanov-ritech wants to merge 55 commits into
techdebtgpt:mainfrom
dzdimov:feat/llm-agnostic-peer-review

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@ipanov-ritech ipanov-ritech commented Jan 14, 2026

🚀 LLM-Agnostic MCP Server with Peer Review Integration

📋 Overview

This PR implements a comprehensive MCP (Model Context Protocol) server for PR Agent that enables AI-powered PR analysis directly in Claude Code, Cursor, and other MCP-compatible editors without requiring API keys.

✨ Key Features

🤖 LLM-Agnostic Architecture

  • Static Analysis First: Provides immediate value without LLM calls
    • Project classification (business logic, infra, data pipeline)
    • Test suggestions with framework detection
    • DevOps cost estimates (AWS resources)
    • Test coverage integration (Jest, Pytest, etc.)
  • Prompt Generation: Returns structured prompts for the calling LLM to execute
  • Flexible Execution: Works with any LLM provider through the calling agent (Claude Code, Cursor, etc.)

🎯 Peer Review Integration

  • Jira Ticket Validation: Automatically detects and validates against Jira tickets
  • Acceptance Criteria Checking: Validates implementation completeness
  • Ticket Quality Assessment: Rates ticket quality and provides feedback
  • Senior Dev Review: Provides blockers, warnings, and recommendations

📊 Auto-Start Dashboard

  • Automatic Launch: Dashboard auto-starts at http://localhost:3000 after analysis
  • Results Persistence: All analysis results saved to local SQLite database
  • History Tracking: View past analyses, trends, and ROI metrics

🔧 Installation Instructions for Team Members

Prerequisites

  • Node.js >= 18.0.0
  • npm or yarn
  • Claude Code CLI (or other MCP-compatible client)

Step 1: Install PR Agent Package

# Install globally from npm
npm install -g @techdebtgpt/pr-agent

# Or install locally in your project
npm install --save-dev @techdebtgpt/pr-agent

Step 2: Configure MCP Server in Claude Code

Add the PR Agent MCP server to your Claude Code configuration:

Location: ~/.claude/config.json (or %APPDATA%\Claude\config.json on Windows)

{
  "mcpServers": {
    "pr-agent": {
      "command": "npx",
      "args": ["@techdebtgpt/pr-agent", "mcp"]
    }
  }
}

Alternative: If installed globally:

{
  "mcpServers": {
    "pr-agent": {
      "command": "pr-agent",
      "args": ["mcp"]
    }
  }
}

Note: No API keys needed! The MCP server leverages the calling LLM (Claude Code) to execute prompts.

Step 3: Create Configuration File

In your repository root, create .pragent.config.json:

{
  "git": {
    "defaultBranch": "main"
  },
  "analysis": {
    "enableStaticAnalysis": true,
    "language": "typescript",
    "framework": "react"
  },
  "peerReview": {
    "enabled": true,
    "useMcp": true,
    "instanceUrl": "https://your-org.atlassian.net",
    "defaultProject": "PROJ"
  }
}

Note: No ai.provider or apiKeys needed for MCP mode - the calling LLM handles execution.

Step 4: Restart Claude Code

After adding the MCP server configuration:

  1. Quit Claude Code completely
  2. Restart Claude Code
  3. The MCP server will automatically load

Step 5: Test the Integration

In Claude Code, try these commands:

Analyze the current branch with peer review enabled

or in any repository:

Run PR Agent MCP analyze on this branch

📖 Usage Examples

Basic Analysis

Analyze this PR against main branch

With Peer Review (Jira Integration)

Analyze branch feature/TODO-123 with peer review enabled

View Results Dashboard

Start the PR Agent dashboard

🎯 Available MCP Tools

The MCP server exposes three tools:

1. analyze

Analyzes PR/branch changes with static analysis and generates LLM prompts.

Parameters:

  • branch (optional): Base branch to compare against
  • staged (optional): Analyze staged changes instead
  • title (optional): PR title (auto-detected from git)
  • cwd (optional): Working directory
  • verbose (optional): Include debug information
  • peerReview (optional): Enable Jira peer review
  • archDocs (optional): Include architecture docs

2. saveAnalysisResults

Saves analysis results to the database after LLM execution.

Parameters:

  • title, complexity, risks, recommendations (required)
  • peerReviewEnabled, ticketKey, ticketQualityScore (optional)
  • Plus other peer review metrics

3. dashboard

Starts the web dashboard on localhost.

Parameters:

  • port (optional): Port to run on (default: 3000)

🏗️ Architecture

MCP Server (PROMPT_ONLY Mode)

// MCP Server returns prompts for calling LLM to execute
const agent = new PRAnalyzerAgent({ mode: ExecutionMode.PROMPT_ONLY });
const result = await agent.analyze(diff, title, mode);
// Returns: { mode: 'prompt_only', prompts: [...], staticAnalysis: {...} }

Key Benefits:

  • ✅ Works without API keys
  • ✅ Leverages Claude Code's built-in LLM
  • ✅ Static analysis runs immediately
  • ✅ Prompts are structured and ready to execute
  • ✅ Backward compatible with CLI tool

🧪 Testing

Thoroughly tested and working:

  • ✅ todo-ai-agents repository (feature/TODO-2-due-dates branch)
  • ✅ peer-agent repository (current branch)
  • ✅ Static analysis without API keys
  • ✅ Peer review prompt generation
  • ✅ Dashboard auto-start
  • ✅ Backward compatibility with CLI tool

📊 Output Format

Static Analysis (Immediate, No LLM)

## 📊 Static Analysis Results

### 🏗️ Project Classification
**Type:** 💼 Business Logic
**Confidence:** 100%

### 🧪 Test Suggestions (7)
[Generated test templates for each modified file]

### 💰 DevOps Cost Estimates (~$25.50/month)
[AWS resource cost breakdown]

### 📈 Test Coverage Report
- Overall: 78.5%
- Lines: 82.1%
- Branches: 71.3%

LLM Analysis Prompts

## 🤖 LLM Analysis Prompts

### Step 1: File Analysis
[Structured prompt with diff context]

### Step 2: Risk Detection
[Structured prompt for security/quality issues]

### Step 3: Summary Generation
[Structured prompt for PR summary]

### Step 4: Ticket Quality Assessment
[Jira ticket quality evaluation]

### Step 5: AC Validation
[Acceptance criteria coverage check]

### Step 6: Peer Review
[Senior dev style review with verdict]

🚧 TODO: Output Format Consistency

Remaining Work: The MCP server output format needs to be standardized to match the CLI output format.

Current State:

  • MCP returns structured prompts + static analysis
  • Output is formatted as Markdown with prompts

Target State:

  • MCP output should match CLI's unified Markdown format
  • Same sections, same structure, same visual presentation
  • Configuration should control which sections appear (e.g., hide peer review if disabled)

Example Target Format (matching CLI):

━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━

✨ PR Agent Analysis Complete!

📋 Summary
[PR summary paragraph]

📊 Complexity
Score: 3/5 - Moderate complexity

⚠️ Detected Risks
1. 🔴 [CRITICAL] [Semgrep] SQL injection vulnerability
2. 🟡 [WARNING] [AI] Missing error handling

💡 Recommendations
1. Add input validation for user data
2. Implement error boundaries in React components

🎫 Peer Review (if enabled)
[Ticket quality, AC validation, verdict]

━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━

This ensures consistency between CLI and MCP user experiences.

🔗 Related Links

📝 Breaking Changes

None. This is a new feature addition that does not affect existing CLI functionality.

🚀 Next Steps

  1. Review and Merge: Review the implementation and merge to main
  2. Output Format Standardization: Align MCP output with CLI format
  3. Publish to npm: Update package version and publish
  4. Team Rollout: Share installation instructions with team
  5. Feedback Collection: Gather feedback on MCP integration

🤝 For Reviewers

Key Files to Review

  • src/mcp/server.ts - Main MCP server implementation (PROMPT_ONLY mode)
  • src/types/agent.types.ts - Type definitions for execution modes
  • src/agents/base-pr-agent-workflow.ts - PROMPT_ONLY mode support
  • src/issue-tracker/peer-review-integration.ts - Peer review in PROMPT_ONLY mode

Testing Checklist

  • MCP server starts without errors
  • Static analysis works without API keys
  • Prompts are generated correctly
  • Dashboard auto-starts at localhost:3000
  • Peer review integration works with Jira
  • Configuration respects all settings
  • No API key requirements
  • Backward compatibility with CLI tool maintained

📞 Support

For issues or questions:


Co-Authored-By: Claude Sonnet 4.5 noreply@anthropic.com

ipanov and others added 30 commits December 29, 2025 12:51
Initial implementation of peer review feature that validates PRs against
linked Jira tickets:

- Add PeerReviewIntegration class with ticket extraction and analysis
- Add JiraMcpClient for MCP-based Jira communication
- Add JiraSubAgent for AI-powered requirement validation
- Add types for Jira tickets, acceptance criteria, and validation results
- Extend analyze command with --peer-review flag
- Update config loader to support peerReview configuration section

The feature extracts ticket references from PR titles, branch names, and
commit messages, then uses AI to validate that code changes satisfy the
ticket's acceptance criteria.

Work in progress - build verification pending.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Fix LangChain import path (langchain/output_parsers -> @langchain/core/output_parsers)
- Fix TypeScript type casting issues in jira-mcp-client.ts
- Refactor peer review to use ProviderFactory for multi-provider support
- Peer review now uses the same provider/model as the main PR analysis

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add Zhipu AI provider with Anthropic-compatible API support
- Fix peerReview config being stripped by Zod validation (add schema)
- Make criteriaId optional in AC validation to prevent parsing errors
- Update README with comprehensive peer review documentation
- Update README with Zhipu AI provider details
- Add verbose debug output for peer review troubleshooting

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Resolved conflicts:
- README.md: Combined peer review and static analysis documentation
- src/cli/commands/analyze.command.ts: Merged imports and output logic

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Added visual dashboard with ROI calculator, quality trends, and risk analysis
- Implemented SQLite persistence to store and aggregate PR analysis results
- Added npm run cli dashboard command for standalone local usage
- Configured Probot server to serve dashboard at root URL
- Updated build pipeline to copy static assets to distribution folder
- Added documentation for Dashboard features and deployment
- Combines peer-review Jira integration with Zhipu AI provider
- Adds analytics dashboard from dime/ui_dashboard branch
- Demo branch for 3pm presentation

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add saveAnalysis() call in analyze command to persist results to database
- Fix database path to use module-relative location instead of cwd
- Calculate complexity from fileAnalyses instead of missing overallComplexity
- Add helper functions for repo info, author, and PR number extraction

The dashboard now displays real PR analysis data from any analyzed repository.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Changed action.yml to point to dist/action.js (ncc-bundled) instead of dist/index.js
- The bundled action.js includes all dependencies (express, etc.)
- Fixes "Cannot find package 'express'" error in GitHub Actions

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
fix: Connect dashboard to real PR analysis data
feat(dashboard): Add JIRA widget, Dark Mode, and layout updates
…est suggestions

Integrates enhanced PR analysis features v0.2.0 with smart change detection that conditionally shows relevant outputs based on file types.

- Estimates AWS infrastructure costs from IaC files (Terraform, CloudFormation, CDK, Pulumi, K8s, Docker)
- Uses static pricing tables - no AWS connection required
- Provides confidence levels (high/medium/low) for estimates

- Auto-detects test framework (Jest, Vitest, Mocha, Pytest)
- Generates framework-specific test templates
- Only suggests for files with significant changes (>5 additions)

- Reads test coverage from multiple formats (Jest, NYC, LCOV, Cobertura)
- Only runs when coverage tool is configured in project
- Shows overall percentage, line/branch coverage

- Categorizes files automatically (code, test, DevOps/IaC)
- Only shows relevant outputs - no noise
- Logs detection for transparency

- Extended SQLite schema with DevOps cost tracking fields
- Added test suggestions and coverage tracking
- New getDevOpsCostStats() function for dashboard

- New DevOps Cost/mo card
- IaC Changes count
- Test Suggestions count
- Average Coverage percentage
- DevOps Resource Types chart

- src/tools/devops-cost-estimator.ts (new)
- src/tools/coverage-reporter.ts (new)
- src/tools/test-suggestion-tool.ts (new)
- src/tools/index.ts (updated exports)
- src/agents/base-pr-agent-workflow.ts (smart detection)
- src/cli/commands/analyze.command.ts (display)
- src/db/index.ts (schema + stats)
- src/types/agent.types.ts (new types)
- src/public/index.html (dashboard cards)
- src/public/dashboard.js (rendering)
…ntry point

- Fixed dashboard.js to use devops_cost_monthly instead of removed cost_usd
- Fixed dashboard.js to use devops_resources instead of total_tokens
- Updated table header from 'Cost' to 'DevOps Cost'
- Fixed action.yml to point to dist/index.js (bundled) instead of dist/action.js
- Created project-classifier tool to distinguish between business logic and QA projects
- Classification based on file patterns and code content analysis
- Provides type-specific recommendations tailored to project focus
- Integrated into PR analysis workflow with automatic detection
- Added display in CLI output after summary
- Helps teams separate concerns between business logic and QA projects
Bug 1: Added DevOps cost trend chart initialization in dashboard.js
- The HTML canvas element chart-cost-trend was present but never rendered
- Now properly displays daily cost trends when data is available
- Shows placeholder message when no cost trend data exists

Bug 2: Convert currentRisks to fixes format in agent workflow
- Both execute() and executeFastPath() were returning empty fixes array
- Now properly converts risks to fixes format for CLI display
- Maintains backward compatibility with Fix interface
- Enables proper display of critical issues and quick actions in CLI
…s-costs

feat(tools): Add smart change detection, DevOps cost estimator, and test suggestions
Adds a standalone MCP plugin that exposes PR Agent functionality
as MCP tools for any MCP-compatible tool (Claude Code, etc.).

Key features:
- LLM-agnostic design: returns diff data for the calling LLM to analyze
- No API keys required in plugin - uses host tool's LLM
- Dashboard integration for tracking analysis metrics

MCP Tools:
- analyze_diff: Get diff ready for AI analysis
- analyze_branch: Get current branch diff for analysis
- get_dashboard_stats: Get dashboard metrics
- get_recent_analyses: Get analysis history
- save_analysis: Save results to dashboard

Commands:
- /pr-analyze: Analyze current branch
- /pr-stats: Show dashboard statistics
- /pr-recent: Show recent analyses

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
…onfig

- Detailed README with tool descriptions and usage examples
- npm package configuration for publishing as pr-agent-mcp
- Added bin entry for npx pr-agent-mcp usage

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- smithery.json for Smithery MCP marketplace
- PUBLISHING.md with npm, Smithery, and mcp.run instructions

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Add a production-ready MCP (Model Context Protocol) server that mirrors the CLI
workflow exactly, enabling PR Agent to work with any MCP-compatible tool
(Claude Code, Cursor, Windsurf, Cline, etc.).

## New Features

- **MCP Server** (`src/mcp/server.ts`): Full implementation with two tools:
  - `analyze`: Mirrors `pr-agent analyze` CLI command exactly
  - `dashboard`: Starts web dashboard for analysis history

- **Publishing Configuration**:
  - `server.json`: MCP Registry configuration
  - `smithery.json`: Smithery marketplace configuration
  - Updated `package.json` with mcpName and npm metadata

- **Documentation**:
  - `docs/MCP-SERVER.md`: Comprehensive MCP server documentation
  - `src/mcp/README.md`: MCP-specific quick start guide
  - Publishing guides for npm, MCP Registry, and Smithery

## Technical Details

- Uses same `.pragent.config.json` as CLI
- Full feature parity: Jira peer review, arch-docs, risk detection, complexity scoring
- Saves analysis to `pr-agent.db` for dashboard
- Follows MCP security best practices (input validation, localhost binding)

## Breaking Changes

- Removed old `pr-agent-plugin/` directory (replaced by integrated `src/mcp/`)

Closes techdebtgpt#28

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- MCP server now uses the same PRAnalyzerAgent workflow as CLI
- Added StubChatModel that triggers fallback paths in the agent
- Added MCPChatModel for future use when Claude Code supports MCP sampling
- PRAnalyzerAgent accepts optional chatModel for pass-through LLM access
- Recommendations and risks are now properly stored in database
- Dashboard "Most Requested Changes" section now populates correctly

The StubChatModel always throws, which forces PRAnalyzerAgent to:
1. Run static analysis (semgrep, pattern matching)
2. Generate default recommendations via catch blocks

The calling LLM (Claude Code, Cursor, etc.) provides AI insights
after receiving the analysis response.

Note: When Claude Code adds MCP sampling support (Issue #1785),
StubChatModel can be replaced with MCPChatModel for true LLM pass-through.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Added analyzeTestQuality() to analyze existing tests and suggest improvements
- Detects missing test scenarios: error handling, edge cases, async ops, validation, state changes
- Generates enhancement code suggestions for Jest, Mocha, Pytest, Vitest
- Integrated into smart change detection workflow
- Displays test enhancements separately from new test suggestions in CLI
- Checks for:
  * Error handling and exception tests
  * Edge case and boundary value tests
  * Async operation tests
  * Input validation tests
  * Return value verification
  * State change and side effect tests
  * Integration test suggestions
- Enhanced TestSuggestion interface with isEnhancement and existingTestFile flags
- Provides actionable code snippets to improve test coverage and quality
- Expand database schema with 12 new columns for peer review data:
  - peer_review_enabled, ticket_key, ticket_quality_score, ticket_quality_tier
  - ac_compliance_percentage, ac_requirements_met, ac_requirements_total
  - peer_review_verdict, peer_review_blockers, peer_review_warnings
  - implementation_completeness, quality_score

- Add getJiraComplianceStats() function to aggregate peer review metrics
- Update analyze.command.ts to save peer review results after analysis
- Update MCP server to include peer_review_enabled flag in saved analyses

The peer review data includes ticket quality ratings, acceptance criteria
compliance, verdict (approve/request_changes/needs_discussion), and
detailed blockers/warnings for dashboard visualization.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
feat: Add peer review data persistence to database
… flag

- Cache project classification in database to avoid re-running on every analysis (saves tokens)
- Add project_classification column to pr_analysis table with migration
- Add getProjectClassification() function to retrieve cached results
- Add --show-classification CLI flag to display classification on demand
- Remove automatic console output for classification (now silent by default)
- Update README with new flag documentation
- Update AgentResult type with projectClassification field
Resolved conflicts:
- src/db/index.ts: Keep both project_classification and peer review fields
- src/agents/pr-analyzer-agent.ts: Keep MCP chatModel support from main
- Added @modelcontextprotocol/sdk dependency
Enable team members to use the PR Agent MCP server by adding committed
configuration files (.mcp.json, .vscode/mcp.json) that work after build.
Clarify architecture in documentation: PR Agent is primarily a CLI tool
with an MCP server component (src/mcp/) that reuses the CLI's analysis
engine. Add comprehensive tool descriptions (analyze, dashboard) and
setup helper script for easy onboarding.

Key changes:
- Add .mcp.json for Claude Code/Cursor/Windsurf team usage
- Add .vscode/mcp.json for VS Code + GitHub Copilot
- Create MCP-LOCAL-SETUP.md with architecture diagram and tool docs
- Add scripts/setup-mcp-local.js helper (npm run mcp:setup)
- Update README.md with MCP architecture notes and tool descriptions
- Update .gitignore to track MCP config files

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Configure PR Agent to work alongside official Atlassian and GitHub MCP
servers for full Jira ticket validation and repository management. The
PR Agent extracts Jira ticket IDs from branches/commits, then Claude Code
uses the Atlassian MCP server to fetch ticket details and validate PRs
against acceptance criteria.

Key changes:
- Add atlassian and github MCP servers to .mcp.json
- Add atlassian and github servers to .vscode/mcp.json
- Document MCP server integration workflow in README.md
- Add "How They Work Together" section to MCP-LOCAL-SETUP.md
- Update Claude Code settings to enable all three servers

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
…tegration

- Replace local Atlassian MCP with official cloud-hosted Rovo MCP Server
- Add comprehensive OAuth-based setup instructions for team members
- Update GitHub MCP server command for Windows compatibility
- Add troubleshooting section and official documentation links
- Clarify that Atlassian integration is required for peer review features

The Atlassian Rovo MCP Server provides secure OAuth 2.1 authentication,
eliminating the need for manual API token management. Configuration is
committed, so team members only need to restart Claude Code and authenticate.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
This commit completes the comprehensive refactoring to make ALL AI-powered
analysis work in PROMPT_ONLY mode for MCP servers, while preserving full
EXECUTE mode functionality for CLI, GitHub Actions, and Probot.

Changes:
- Unified AnalysisPrompt interface in agent.types.ts for both main analysis and peer review
- Updated jira-sub-agent.ts to import AnalysisPrompt from agent.types.ts
- Added 'instructions' field to all AnalysisPrompt objects in peer review
- Removed unused StubChatModel and MCPChatModel classes
- Fixed type compatibility issues between different AnalysisPrompt definitions
- Cleaned up MCP server to use PROMPT_ONLY mode throughout

The architecture now supports two execution modes:
1. EXECUTE mode (CLI/GitHub Action/Probot): Executes prompts with API keys
2. PROMPT_ONLY mode (MCP): Returns prompts for calling LLM to execute

All 7 LLM invocation points are now LLM-agnostic:
- Main PR Analysis: 4 points (file analysis, risk detection, summary, refinement)
- Peer Review: 3 points (ticket quality, AC validation, peer review)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
ipanov-ritech and others added 23 commits January 13, 2026 22:40
Added streaming:true to Anthropic and Zhipu providers to prevent
timeout errors on long operations (>10 minutes).

Changes:
- anthropic.provider.ts: Enable streaming
- zhipu.provider.ts: Enable streaming for GLM-4.7
- Increases all provider maxTokens defaults to 50,000

This fixes AnthropicError: "Streaming is required for operations
that may take longer than 10 minutes"

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Enable peer review by default in DEFAULT_CONFIG
- Auto-open dashboard at http://localhost:3000 after analysis completes
- Update .pr-analyzer.yml with latest model (claude-sonnet-4-5-20250929)
- Increase max_tokens to 50000 for large PR analysis
- Add C# (.cs) and C/C++ file patterns to configuration
- Fix dashboard routing pattern from '*' to '/' to prevent path-to-regexp errors
- Add peer review configuration section to .pr-analyzer.yml

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Auto-start dashboard server in background on analysis complete
- Enhanced peer review with proper Jira configuration
- Add *.db to .gitignore to prevent committing sensitive data
- Update dist files with latest build

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
…rver

Fixes MCP server to match CLI behavior:
- Auto-starts dashboard after analysis completes
- Opens browser automatically with dashboard URL
- Adds saveAnalysisResults MCP tool for LLM to persist analysis data
- Dashboard now accessible immediately after running analysis

Changes:
- Added startDashboardInBackground() function
- Auto-start dashboard after returning prompts (non-blocking)
- New MCP tool: saveAnalysisResults (saves peer review data to DB)
- Matches CLI behavior from analyze.command.ts lines 645-672

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Fixes missing parameter error when saving analysis results
- Adds defaults for devops fields in database record preparation
Working on refactoring MCP server to execute LLM analysis internally
instead of returning prompts. Goal is to match CLI behavior with
unified Markdown output, auto-save to database, and dashboard auto-start.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
feat: LLM-Agnostic MCP Server with Peer Review Integration
- Resolved conflicts by keeping both feature sets
- Merged imports in base-pr-agent-workflow.ts
- Accepted dist files from main (will regenerate)
- Kept all peer review features from PR #18
- Kept all test enhancement and DevOps cost features from PR #17
## Features
- Added coverage-analyzer.ts with nyc/Istanbul coverage parsing (LCOV, JSON formats)
- Added ESLint static analysis integration
- New CLI flags:
  * --scan-coverage: Run test coverage analysis
  * --show-coverage: Display coverage metrics
  * --show-static-analysis: Run ESLint analysis
  * --peer-review: Enable Jira peer review (moved from config-only)

## Coverage Analysis
- Parses coverage-summary.json and lcov.info reports
- Identifies files with low coverage (<50%)
- Suggests uncovered functions and branches for testing
- Formats coverage report for CLI output

## Static Analysis
- Runs ESLint on project files
- Reports errors, warnings, and fixable issues
- Integrates with existing test enhancement suggestions

## Technical Details
- Created src/tools/coverage-analyzer.ts with full TypeScript types
- Exported types: CoverageMetrics, FileCoverage, UncoveredCode, CoverageAnalysis
- Integrated into analyze command flow
Added documentation for new CLI flags:
- --scan-coverage: Run test coverage analysis
- --show-coverage: Display coverage metrics
- --show-static-analysis: Run ESLint analysis
- --peer-review: Enable Jira integration
- Example for full analysis with all static analysis features
…s-costs

Testing Features enchancements, static code analysis
- Update MCP server with improved tool handling
- Add PR description documentation files
- Include team communication materials
- Update dist files with latest build

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Ignore test output, analysis results, and snapshot files that are
generated during local development and testing.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Includes static code analysis, test enhancement suggestions, and
project classification caching from main branch.

Resolved dist/index.js conflict by rebuilding the GitHub Action bundle.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
BREAKING CHANGE: Peer review no longer defaults to enabled

- Fix MCP server peer review to respect config (was defaulting to true)
- Improve CLI boolean logic to use nullish coalescing (??)
- Both CLI and MCP now consistently respect config.peerReview.enabled
- Peer review only runs when explicitly enabled in config or via flag
- All other config settings (archDocs, enableStaticAnalysis) remain consistent

This ensures predictable behavior: PR Agent only enables features when
configured, not by default.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Create multi-root workspace to view both repos simultaneously:
- peer-agent: Main PR analysis tool
- todo-ai-agents: Target repo for testing and integration

Includes recommended extensions and workspace settings.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Fixed MCP server analyze tool to work properly on Windows by adding
shell:true to execSync calls. This resolves ENOENT errors when running
git commands through the MCP server on Windows systems.

Changes:
- Added shell:true to all execSync calls in server.ts
- Cleaned up obsolete dist files from build refactoring
- MCP server now successfully analyzes PRs on Windows

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Created OutputFormatter utility to ensure consistent formatting between
CLI terminal output and MCP server markdown output. Both now display:
- Project classification
- Test suggestions (new tests and enhancements)
- Coverage reports
- Static analysis results

This provides deterministic, consistent output regardless of which
interface (CLI or MCP) is used.

Changes:
- Created src/utils/output-formatter.ts with OutputFormatter class
- Supports both 'terminal' (chalk colors) and 'markdown' modes
- MCP server now uses shared formatter for test suggestions
- Ensures test suggestions appear in MCP output consistently
- Matches CLI formatting structure and information density

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
CRITICAL FIX: Prevent silent failures and ensure prompts are always executed

Changes:
1. JiraMcpClient: Automatic fallback from MCP to API when MCP fails
   - Clear error logging at each step
   - Graceful degradation: MCP → MCP Search → API → null
   - Shows which method succeeded/failed

2. MCP Server: Show errors to user, don't silently fail
   - Display peer review errors in output
   - Explain possible causes and solutions
   - Continue analysis with base prompts if peer review fails

3. MCP Server: Clearer prompt execution instructions
   - Explicit "YOU MUST EXECUTE" warnings
   - Expected token usage guidance (~10k+ tokens)
   - Step-by-step execution requirements

4. Error handling improvements:
   - All exceptions logged with context
   - No silent catch blocks
   - User always informed of failures

This ensures:
- Analysis never completely fails due to one component
- Users know WHY something failed
- Calling LLM knows it MUST execute prompts
- Automatic fallback when tools are unavailable

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Refactored the 970-line monolithic server.ts into a clean, maintainable architecture:

BEFORE:
- src/mcp/server.ts: 970 lines (all logic inline)

AFTER:
- src/mcp/server.ts: 102 lines (89% reduction, tool registration only)
- 13 new modular files with clear separation of concerns

NEW STRUCTURE:

1. Constants & Types (2 files)
   - constants.ts: All magic strings, numbers, messages, tool schemas
   - types.ts: MCP-specific type definitions

2. Service Classes (6 files - Single Responsibility)
   - GitService: Git operations (diff, branch, repo info)
   - DiffParserService: Parse git diff into structured data
   - TicketExtractorService: Extract Jira ticket references
   - FormatterService: Format analysis output for MCP responses
   - DashboardService: HTTP dashboard server lifecycle management
   - PeerReviewService: Orchestrate peer review workflow

3. Tool Handlers (3 files - One per MCP tool)
   - AnalyzeTool: Handle analyze tool requests
   - SaveResultsTool: Handle save results requests
   - DashboardTool: Handle dashboard requests

4. Index Files (2 files)
   - services/index.ts: Export all services
   - tools/index.ts: Export all tool handlers

BENEFITS:
✅ SOLID principles: Each class has single responsibility
✅ Testability: Stateless services ready for unit tests
✅ Maintainability: Clear separation of concerns
✅ No magic strings: All constants centralized
✅ Type safety: Proper type definitions throughout
✅ Modularity: Easy to add new tools or services

This architecture follows MCP best practices: stateless services,
separation of transport from business logic, and clear boundaries
for error handling and testing.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
…atic analysis output

PROBLEM:
OutputFormatter.formatStaticAnalysis() was only formatting project
classification and test suggestions, but was missing:
1. DevOps cost estimates (devOpsCostEstimates)
2. Coverage reports (coverageReport)

These features were running in the agent workflow but not appearing
in MCP server output.

SOLUTION:
- Added formatDevOpsCostEstimates() method to OutputFormatter
- Updated formatStaticAnalysis() to include both missing features
- Now MCP output has complete feature parity with CLI

VERIFICATION:
All static analysis tools confirmed running in PROMPT_ONLY mode:
✓ Project classification (src/tools/project-classifier.ts)
✓ Test suggestions (src/tools/test-suggestion-tool.ts)
✓ DevOps cost estimator (src/tools/devops-cost-estimator.ts)
✓ Coverage analyzer (src/tools/coverage-reporter.ts)

Workflow analysis confirms CLI and MCP server execute identically:
- Both call PRAnalyzerAgent.analyze() with same options
- Both run detectAndAnalyzeChangeTypes() for static analysis
- Both include all 4 features in output (now that formatter is fixed)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Integrate deterministic DevOps cost analysis into MCP server to show infrastructure cost estimates in analysis output.

Changes:
- Add devOpsCostEstimates and totalDevOpsCost fields to MCP types
- Run analyzeDevOpsFiles in analyze-tool before LLM prompts (deterministic analysis)
- Format DevOps cost estimates in MCP output with confidence indicators
- Fix Terraform resource extraction regex to handle diff format (+ prefix)
- Add debug logging for cost analysis tracing

The cost estimation now works consistently in both CLI and MCP modes using the same deterministic code.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Add complete test suite following MCP testing best practices with unit tests for services and integration tests for tools.

Unit Tests:
- GitService: Git command execution and output parsing (14 tests)
- TicketExtractorService: Ticket reference extraction (10 tests)
- FormatterService: MCP output formatting (15 tests)
- DevOps Cost Estimator: Infrastructure cost estimation (30+ tests)

Integration Tests:
- AnalyzeTool: Full analysis workflow with git mocks (15 tests)
- SaveResultsTool: Database operations and persistence (14 tests)
- MCP Server: End-to-end protocol compliance (10 tests)

Testing Approach:
- Mock all external dependencies (git, filesystem, database)
- Test MCP protocol response format compliance
- Test PROMPT_ONLY mode (returns prompts, no LLM execution)
- Test deterministic analysis (DevOps costs, static analysis)
- Test error handling and graceful degradation

References:
- https://modelcontextprotocol.info/docs/best-practices/
- https://milvus.io/ai-quick-reference/how-do-i-write-unit-tests-for-model-context-protocol-mcp-tools-and-resources
- https://github.com/haakco/mcp-testing-framework

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
ipanov-ritech and others added 2 commits January 27, 2026 15:36
Fix GitHub Actions workflow failure caused by missing dependencies (express, probot, etc.).

The bundled dist/index.js now includes all dependencies (4.1MB) so the action can run without npm install.

Changes:
- Rebuilt dist/index.js with ncc bundler (4.1MB with all deps)
- Removed dist/index.js.map (not needed for bundled action)
- Updated type definitions

Fixes: ERR_MODULE_NOT_FOUND for express package in GitHub Actions

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
The dist/index.d.ts file contained type definitions for the Probot app
(src/index.ts) which import 'express'. When the GitHub Action runs, Node.js
tries to load this file alongside dist/index.js, causing ERR_MODULE_NOT_FOUND.

The GitHub Action (dist/index.js) should not have type definitions alongside
it - it's a bundled executable, not a library.

Fix: Delete dist/index.d.ts to prevent Node.js from attempting to load the
Probot app's type definitions when running the GitHub Action.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
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5 participants