feat: Switch to pyproject and add CI.

.github/TEST_FAIL_TEMPLATE.md

@@ -0,0 +1,8 @@
+---
+title: {{ env.TITLE }}
+labels: bug
+---
+
+Tests are failing on {{ env.PLATFORM }} with Python {{ env.PYTHON }} when installing with `--pre` flag.
+
+Please check the [CI run](https://github.com/{{ env.GITHUB_REPOSITORY }}/actions/runs/{{ env.RUN_ID }}) for details.

.github/workflows/ci.yml

@@ -0,0 +1,100 @@
+name: CI
+
+on:
+  push:
+    branches:
+      - master
+    tags:
+      - "v*"
+  pull_request:
+  workflow_dispatch:
+  schedule:
+    # run every week (for --pre release tests)
+    - cron: "0 0 * * 0"
+
+# cancel in-progress runs that use the same workflow and branch
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test:
+    name: ${{ matrix.platform }} (${{ matrix.python-version }})
+    runs-on: ${{ matrix.platform }}
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+        platform: [ubuntu-latest]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache-dependency-path: "pyproject.toml"
+          cache: "pip"
+
+      - name: Install Dependencies
+        run: |
+          python -m pip install -U pip
+          # if running a cron job, we add the --pre flag to test against pre-releases
+          python -m pip install .[test] ${{ github.event_name == 'schedule' && '--pre' || ''  }}
+
+      - name: Run Tests
+        run: pytest --color=yes --cov --cov-report=xml --cov-report=term-missing
+
+      # If something goes wrong with --pre tests, we can open an issue in the repo
+      - name: Report --pre Failures
+        if: failure() && github.event_name == 'schedule'
+        uses: JasonEtco/create-an-issue@v2
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          PLATFORM: ${{ matrix.platform }}
+          PYTHON: ${{ matrix.python-version }}
+          RUN_ID: ${{ github.run_id }}
+          TITLE: "[test-bot] pip install --pre is failing"
+        with:
+          filename: .github/TEST_FAIL_TEMPLATE.md
+          update_existing: true
+
+      - name: Coverage
+        uses: codecov/codecov-action@v5
+
+  deploy:
+    name: Deploy
+    needs: test
+    if: success() && startsWith(github.ref, 'refs/tags/') && github.event_name != 'schedule'
+    runs-on: ubuntu-latest
+
+    permissions:
+      # IMPORTANT: this permission is mandatory for trusted publishing on PyPi
+      # see https://docs.pypi.org/trusted-publishers/
+      id-token: write
+      # This permission allows writing releases
+      contents: write
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.x"
+
+      - name: Build
+        run: |
+          python -m pip install build
+          python -m build
+
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+
+      - uses: softprops/action-gh-release@v2
+        with:
+          generate_release_notes: true
+          files: './dist/*'

dynamotable/__init__.py

@@ -1,2 +1,8 @@
+from importlib.metadata import PackageNotFoundError, version
+
 from .io import read, write
-from .version import __version__
+
+try:
+    __version__ = version("dynamotable")
+except PackageNotFoundError:
+    __version__ = "uninstalled"

pyproject.toml

@@ -0,0 +1,39 @@
+[build-system]
+requires = ["hatchling", "hatch-vcs"]
+build-backend = "hatchling.build"
+
+[tool.hatch.version]
+source = "vcs"
+
+[project]
+name = "dynamotable"
+dynamic = ["version"]
+description = "Read and write Dynamo table files as pandas dataframes"
+readme = "README.md"
+requires-python = ">=3.10"
+license = { text = "BSD-3-Clause" }
+authors = [{ name = "Alister Burt", email = "alisterburt@gmail.com" }]
+classifiers = [
+    "Development Status :: 3 - Alpha",
+    "License :: OSI Approved :: BSD License",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+]
+keywords = ["IO", "dynamo", "table file", "cryo-EM", "cryo-ET"]
+dependencies = ["pandas>=1.0.5"]
+
+[project.optional-dependencies]
+test = ["pytest", "pytest-cov"]
+
+[project.urls]
+homepage = "https://github.com/alisterburt/dynamotable"
+repository = "https://github.com/alisterburt/dynamotable"
+
+[tool.pytest.ini_options]
+testpaths = ["test"]
+
+[tool.coverage.run]
+source = ["dynamotable"]