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93 changes: 74 additions & 19 deletions doc/user_guide/lfric.rst
Original file line number Diff line number Diff line change
Expand Up @@ -162,24 +162,30 @@ least rank (number of dimensions) one. Scalar arrays are identified with
Field
+++++

LFRic API fields, identified with ``GH_FIELD`` metadata, represent
FEM discretisations of various dynamical core prognostic and diagnostic
LFRic API fields, identified with ``GH_FIELD`` metadata, represent FEM
discretisations of various dynamical core prognostic and diagnostic
variables. In FEM, variables are discretised by placing them into a
function space (see :ref:`lfric-function-space`) from which they
inherit a polynomial expansion via the basis functions of that space.
Field values at points within a cell are evaluated as the sum of a set
of basis functions multiplied by coefficients which are the data points.
Points of evaluation are determined by a quadrature object
of basis functions multiplied by coefficients which are the data
points. Points of evaluation are determined by a quadrature object
(:ref:`lfric-quadrature`) and are independent of the function space
the field is on. Placement of field data points, also called degrees of
freedom (hereafter "DoFs"), is determined by the function space the field
is on.
the field is on. Placement of field data points, also called degrees
of freedom (hereafter "DoFs"), is determined by the function space the
field is on. An LFRic multi-data field can have more than one value
associated with each data point.

LFRic fields passed as arguments to any :ref:`LFRic kernel
<lfric-kernel-valid-data-type>` can be of ``real`` or ``integer``
primitive type. In the LFRic infrastructure, these fields are
represented by instances of the ``field_type`` and ``integer_field_type``
classes, respectively.

Typically, a field will have the same number of vertical layers as the
model mesh. However, this is not a requirement and the number of layers
can be as few as one (a 2D field).
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I would suggest avoiding the idea that there is a particular model mesh. For example, we will have apps that regrid data from one number of levels to another.

Suggested change
Typically, a field will have the same number of vertical layers as the
model mesh. However, this is not a requirement and the number of layers
can be as few as one (a 2D field).
While an application may model a set of fields that all have the same number of
vertical levels, this is not a requirement. An application may have fields on a range
of different levels including fields on a single level (a 2D field).


.. _lfric-field-vector:

Field Vector
Expand Down Expand Up @@ -919,8 +925,8 @@ All three CMA-related kernel types must obey the following rules:
1) Since a CMA operator only acts within a single column of data,
stencil operations are not permitted.

2) No vector quantities (e.g. ``GH_FIELD*3`` - see below) are
permitted as arguments.
2) No vector quantities (e.g. ``GH_FIELD*3`` - see below) or
multi-data fields are permitted as arguments.

3) The kernel must operate on cell-columns.

Expand Down Expand Up @@ -1636,7 +1642,7 @@ to have stencil accesses, these two options are mutually exclusive.
The metadata for each case is described in the following sections.

Stencil Metadata
________________
""""""""""""""""


Stencil metadata specifies that the corresponding field argument is accessed
Expand Down Expand Up @@ -1716,8 +1722,7 @@ be found in ``examples/lfric/eg5``.
.. _lfric-intergrid-mdata:

Inter-Grid Metadata
___________________

"""""""""""""""""""

The alternative form of the optional fifth metadata argument for a
field specifies which mesh the associated field is on. This is
Expand Down Expand Up @@ -1748,6 +1753,45 @@ meshes cannot be on the same function space while those on the same
mesh must also be on the same function space.


Number of Layers Metadata
"""""""""""""""""""""""""

If a particular field argument to a kernel has a number of vertical levels
that is not the same as the extruded mesh then this must be specified using
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I may be misunderstanding this. I am assuming it relates to a kernel which, for example, takes an argument which may be, say, an 70-level field but could be a 50-level or 40-level field. But the kernel should only set 40 levels (or fewer) of the field. Most typically, perhaps, it would be useful when setting the bottom level of a field of any number of levels.

Suggested change
that is not the same as the extruded mesh then this must be specified using
that may be different from the mesh of the input field then this must be specified using

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I don't know what the use case is I'm afraid. However, when we discussed with Chris and Iva we were definitely talking about fields that did not have e.g. 70 levels because that then changed the values in the dof map. On the other hand, if all fields actually have the same number of levels but only populate a subset of them then all of their dofmaps will be identical (for a given FS). I think this needs clarification from @TeranIvy or @tommbendall?

the ``NLAYERS`` option to ``GH_FIELD``, e.g.::

arg_type(GH_FIELD, GH_REAL, GH_READ, W3, NLAYERS=1)

The value specified for ``NLAYERS`` may be a literal if it is known at
compile time. Alternatively, it may be given a named value (one of
``GH_NLAYERSM1`` TODO) or the special value
``GH_RUNTIME``. A named value means that the number of levels is to be
determined at runtime by querying the field object (in the generated
PSy layer). If two different field arguments are on the same function
space but both have ``NLAYERS=GH_RUNTIME`` then it is assumed that
they may have *different* values of ``NLAYERS`` and hence a separate
dofmap is passed to the kernel for each. However, if two or more field
arguments are on the same function space and have the same, named number
of layers which is not ``GH_RUNTIME`` then only one dofmap is passed to
the kernel for those arguments.
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Suggested change
of layers which is not ``GH_RUNTIME`` then only one dofmap is passed to
the kernel for those arguments.
of layers which is not ``GH_RUNTIME`` then only one dofmap, the dofmap of the
first field listed in the metadata, is passed to the kernel for those arguments.



Multi-Data Metadata
"""""""""""""""""""

A multi-data field is the same as a standard field apart from having multiple
values associated with each DoF. This is indicated in the field metadata by
the optional ``NDATA`` argument to GH_FIELD, e.g.::

arg_type(GH_FIELD, GH_REAL, GH_READ, W2, NDATA=4)

The value specified for ``NDATA`` may be a literal if it is known at
compile time. Alternatively, it may be given the special value
``GH_RUNTIME`` which means that the number of data values at each DoF
is to be determined at runtime by querying the field object (in the
generated PSy layer).
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For LFRic atmosphere, It would be useful to have the same flexibility for giving named values as is done for NLAYERS: in fact, it is more useful to have the flexibility here than for NLAYERS as there is less mixing and matching of layer numbers.

We have a lot of physics kernels with ~100 fields with a handful of multidata choices distinguished by ANY_DISCONTINUOUS_SPACE_1, ANY_DISCONTINUOUS_SPACE_2 etc. If they are converted to GH_RUNTIME we would need separate dofmaps etc. for each of the many fields rather than for each of the ANY_DISCONTINUOUS_SPACE choices. Example kernel here [MOSRS password protected]:

https://code.metoffice.gov.uk/trac/lfric_apps/browser/main/trunk/interfaces/physics_schemes_interface/source/kernel/bl_exp_kernel_mod.F90

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Just commenting that I agree with this point! In fact I think the most common situation is that NDATA will be a runtime variable, but there might be many multidata fields being passed as arguments the same kernel, but all using the same NDATA value.

I'm not sure what the best solution to this is... because the NDATA values are science-related, I don't think we want any specific values hard-coded in arguments_mod.

Could we define a local variable for NDATA to take? e.g.

type(ndata_type) :: LAND_TILES
type(ndata_types) :: NUM_AEROSOLS

arg_type(GH_FIELD, GH_REAL, GH_READ, W2, NDATA=4)
type(arg_type) :: meta_args(4) = (/  &
     arg_type(GH_FIELD, GH_REAL, GH_READWRITE, W3),  &
     arg_type(GH_FIELD, GH_REAL, GH_READ,  W3, NDATA=LAND_TILES), &
     arg_type(GH_FIELD, GH_REAL, GH_READ,  WTHETA, NDATA=NUM_AEROSOLS), &
     arg_type(GH_FIELD, GH_REAL, GH_READ,  W3, NDATA=NUM_AEROSOLS)  &
/)

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This is the sort of thing I had envisaged (though originally I was thinking of a direct but more meaningful replacement for ANY_*SPACE entries).

One of the challenges of moving away from ANY_DISCONTINUOUS_SPACE settings was deciding how and where to name scientifically-meaningful versions given that arguments_mod is in core. One could have a physics module to store them which would enable a common set to be used by several kernels.

I think they would need to be initialised so as not to cause any compiler warnings? If so, that's another reason for hiding them in a module.

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Great, that's the same as I was imagining for NLAYERS so it's straightforward to do from a PSyclone point of view. I can see your issue with names in core and physics but I'll let you wrangle that :-)

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Something else to consider that Tom M has just mentioned is that we have two types of multidata field. Those with ndata_first and those without. We may also need to capture that



Column-wise Operators (CMA)
^^^^^^^^^^^^^^^^^^^^^^^^^^^

Expand Down Expand Up @@ -2080,7 +2124,12 @@ conventions, are:
4) If the field entry stencil access is of type ``XORY1D`` then
add an additional ``integer`` direction argument of kind
``i_def`` and with intent ``in``.

5) If the field is multi-data then the kernel must be passed the
value of ``NDATA``: add an additional ``integer``, scalar
argument of kind ``i_def`` and intent ``in``.
6) If the field has a custom number of vertical levels then pass this as
an additional ``integer``, scalar argument of kind ``i_def`` and
intent ``in``.
3) If the current entry is a field vector then for each dimension
of the vector, include a field array. The field array name is
specified as
Expand All @@ -2106,21 +2155,26 @@ conventions, are:
the data type and kind specifed in the metadata. The ScalarArray
must be denoted with intent ``in`` to match its read-only nature.

4) For each function space in the order they appear in the metadata arguments
(the ``to`` function space of an operator is considered to be before the
4) DoF maps for function spaces are handled in the order they appear in the
metadata arguments (the ``to`` function space of an operator is considered
to be before the
``from`` function space of the same operator as it appears first in
lexicographic order)
lexicographic order). Note that if two fields on a given function space have
differing numbers of vertical layers, then each requires that a
dofmap be supplied (because the number of vertical layers alters the
*values* within the map). For each required DoF map:

1) Include the number of local degrees of freedom (i.e. number per-cell)
for the function space. This is an ``integer`` of kind ``i_def`` and
has intent ``in``. The name of this argument is
``"ndf_"<field_function_space>``.

2) If there is a field on this space

1) Include the unique number of degrees of freedom for the function
space. This is an ``integer`` of kind ``i_def`` and has intent ``in``.
The name of this argument is ``"undf_"<field_function_space>``.
2) Include the **dofmap** for this function space. This is an ``integer``
2) Include the **dofmap** itself. This is an ``integer``
array of kind ``i_def`` with intent ``in``. It has one dimension
sized by the local degrees of freedom for the function space.

Expand Down Expand Up @@ -2443,8 +2497,9 @@ dofmap for both the to- and from-function spaces of the CMA
operator. Since it does not have any LMA operator arguments it does
not require the ``ncell_3d`` and ``nlayers`` scalar arguments. (Since a
column-wise operator is, by definition, assembled for a whole column,
there is no loop over levels when applying it.)
The full set of rules is then:
there is no loop over levels when applying it.) Note that fields with
non-standard ``nlayers`` or ``ndata > 1`` cannot be supplied as
arguments to CMA kernels. The full set of rules is:

1) Include the ``cell`` argument. ``cell`` is an ``integer`` of kind
``i_def`` and has intent ``in``.
Expand Down
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