v4.0.0

Added support for new indel classifications

v3.0.11

Minor corrections and updates

v3.0.6

Updated exported function `ReadCatalog` to support reading in SBS1536…

New release for mSigHdp paper

This release is for the supplementary code used in manuscript:

Mo Liu†, Yang Wu†, Nanhai Jiang, Arnoud Boot, Steven G. Rozen*, "mSigHdp: hierarchical Dirichlet process mixture modeling for mutational signature discovery".

v3.0.0

Updated README and reference manual

v2.3.17

corrected minor revision number

v2.3.16

Updated data.R

v2.3.14

• Added deprecated information to the titles of several exported functions.

• Fixed a bug in internal function CheckAndNormalizeTranCatArgs for
  transforming catalog. If the target.abundance can be inferred and is different
  from a supplied non-NULL value of target.abundance, no longer raise an
  error. Use the supplied non-NULL value of target.abundance instead.

• Updated internal function ReadBedRanges to only keep entries that are from
  chromosomes 1-22 and X and Y.

• Added exported function SimpleReadVCF; some code simplification.

v2.3.11

Added backward compatible new argument always.merge.SBS to several fu…

v2.3.10

Update README.md