Move ci bash scripts to ci yml

[shimwell]

Description

Making use of if statements in the ci yml script to move more content of the scripts/ci folder to the ci yml file. I think this results in a clearer view of the CI process.

Fixes # (issue)

Checklist

• I have performed a self-review of my own code
• I have run clang-format (version 15) on any C++ source files (if applicable)
• I have followed the style guidelines for Python source files (if applicable)
• I have made corresponding changes to the documentation (if applicable)
• I have added tests that prove my fix is effective or that my feature works (if applicable)