Move transition matrix computation outside of main function#15

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mfalkiewicz wants to merge 7 commits intosensein:masterfrom

mfalkiewicz:refactor_dm

Commits on Dec 27, 2017

Fixed affinity matrix code for sklearn

Marcel Falkiewicz
authored and
Marcel Falkiewicz
committed
Fixed imports
mfalkiewicz
committed

Commits on Dec 28, 2017

Commits on Jan 1, 2018

Commits on Jan 2, 2018

Return affinity matrix, but not as part of self
mfalkiewicz
committed